Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006683

Physical Location & Seq

Genomic Coordinates Forward (+)

16463090 .. 16467427

Gene Structure 4338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTCATATTTGTGCTCTTGTATTGTGCTTTTAGGTACTATGCACCTGCATTGGGTTTCCTGATGTTCGCAGTTGGGGTTAATTCCAGCGAAAAGGATTTCCTTGAAGCTTTCAAGAGACCAGCAGCTATTTTTGCTGGTTATATTGGTCAATTTGTTGTCAAGCCTCTTCTTGGATATATTTTTGGCATTATCTCAGTAGCAATATTTGGTCTTCCAACTCCAGTAGGTGCGGGGATTATGTTGGTATCTTGTGTCAGTGGCGCCCAGCTCTCAAACTATGCTACTTTTCTGACCGACCCACAAATGGCTCCTCTAAGCATTGTCATGACATCATTGTCTACCGCTACTGCTGTATTTGTCACACCATTCTTATCGCTTCTGCTCATTGGAAAGAGATTGCCTGTTGATGTAAAGGGAATGGTCTCCAGCATTCTGCAGATTGTAGTTACACCAATTGTTGCAGGCTTGCTTTTGAATAGGTTTCTTCCCCAGATATGTAATGCTATTCGGCCATTTTTGCCTCCACTATCAGTATTAGTAACAGCATGCTGTGTTGGAGCACCACTTGCCATTAACATCGAGTCTGTTCTGTCTCCTTTTGGATTAACCATTTTGTTGCTCATTATCACATTTCATTTGACGGCGTTTATAGCTGGGTATTTTCTTACTGGCATGGCCTTTCATGGGGCACCTGATGTCAAACCATTACAAAGAACACTATCCTATGAGACAGGAATGCAAAGCAGTCTTCTGGCCCTTGCACTTGCTAATAGATTTTTCCAAGATCCACTAGTGGGAGTTCCTCCAGCAATTTCTACTGTGGTGATGTCTTTGATGGGTTTCTCCCTTGTCATGGTTTGGACCATAAGGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015075 GO:0015238 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016143 GO:0016144 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0022857 GO:0031967 GO:0031975 GO:0033321 GO:0033506 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043879 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0097339 GO:0098656 GO:1900866 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901618 GO:1901657 GO:1901659 GO:1901700 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

293

Amino Acids

31.47

Weight (kDa)

9.02

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	16 - 199	9e-47	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12030 AT4G12030 AT4G12030 AT4G12030 AT4G12030
fragaria_vesca	FvH4_5g00950 FvH4_5g00950 FvH4_5g00950
malus_domestica	MD04G1076800.v1.1
prunus_persica	Prupe.4G251800_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1
pyrus_communis	pycom04g06760
rosa_chinensis	RchiOBHm_Chr7g0200441
rosa_laevigata	RLG00000003725
rosa_multiflora	Rmu_sc0000617.1_g000038
rosa_roxburghii	Rroxscaffold_3G00255980
rosa_rugosa	Rorug07G0060300
rosa_samantha	Rh7AG185700 Rh7BG188900 Rh7CG196000 Rh7DG189800
rosa_wichuraiana	Rw7G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	55
AasI	GACNNNNNNGTC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	55
AccB1I	GGYRCC	2 cut(s)	263, 691
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	2 cut(s)	233, 345
AclWI	GGATC	1 cut(s)	782
AcoI	YGGCCR	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	6 cut(s)	53, 173, 307, 687, 797, 856
AgsI	TTSAA	3 cut(s)	107, 115, 478
AhlI	ACTAGT	1 cut(s)	793
AluBI	AGCT	4 cut(s)	110, 128, 271, 656
AluI	AGCT	4 cut(s)	110, 128, 271, 656
Alw21I	GWGCWC	2 cut(s)	18, 565
Alw26I	GTCTC	4 cut(s)	112, 430, 600, 725
AlwI	GGATC	1 cut(s)	782
AoxI	GGCC	3 cut(s)	512, 678, 756
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	757, 864
AsuHPI	GGTGA	1 cut(s)	838
AvaII	GGWCC	1 cut(s)	864
BaeGI	GKGCMC	1 cut(s)	694
BanI	GGYRCC	2 cut(s)	263, 691
BbsI	GAAGAC	2 cut(s)	206, 743
Bbv12I	GWGCWC	2 cut(s)	18, 565
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	832
BceAI	ACGGC	1 cut(s)	660
BcoDI	GTCTC	4 cut(s)	112, 430, 600, 725
BcuI	ACTAGT	1 cut(s)	793
BfaI	CTAG	1 cut(s)	794
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	864
BmgT120I	GGNCC	2 cut(s)	757, 864
BmiI	GGNNCC	3 cut(s)	265, 312, 693
BpiI	GAAGAC	2 cut(s)	206, 743
BpmI	CTGGAG	3 cut(s)	207, 412, 792
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	2 cut(s)	112, 430
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 173, 307, 687, 797, 856
Bse1I	ACTGG	2 cut(s)	224, 676
BseLI	CCNNNNNNNGG	6 cut(s)	53, 173, 307, 687, 797, 856
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	224, 676
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	2 cut(s)	267, 656
BshFI	GGCC	3 cut(s)	514, 680, 758
BshNI	GGYRCC	2 cut(s)	263, 691
BsiHKAI	GWGCWC	2 cut(s)	18, 565
BslI	CCNNNNNNNGG	6 cut(s)	53, 173, 307, 687, 797, 856
BsmAI	GTCTC	4 cut(s)	112, 430, 600, 725
BsmI	GAATGC	2 cut(s)	432, 744
BsnI	GGCC	3 cut(s)	514, 680, 758
Bso31I	GGTCTC	2 cut(s)	112, 430
Bsp1286I	GDGCHC	3 cut(s)	18, 565, 694
Bsp143I	GATC	1 cut(s)	787
BspACI	CCGC	2 cut(s)	233, 345
BspANI	GGCC	3 cut(s)	514, 680, 758
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	265, 312, 693
BspMAI	CTGCAG	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	782
BspT107I	GGYRCC	2 cut(s)	263, 691
BspTNI	GGTCTC	2 cut(s)	112, 430
BsrI	ACTGG	2 cut(s)	224, 676
BssMI	GATC	1 cut(s)	787
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	466, 470, 550
BstDEI	CTNAG	2 cut(s)	196, 317
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	790
BstMAI	GTCTC	4 cut(s)	112, 430, 600, 725
BstMBI	GATC	1 cut(s)	787
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 520, 569, 653
BstNSI	RCATGY	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	2 cut(s)	206, 743
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	3 cut(s)	514, 680, 758
BtsIMutI	CAGTG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	466, 470, 550
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	757, 864
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	5 cut(s)	328, 549, 676, 686, 856
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	196, 317
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	1 cut(s)	789
DpnII	GATC	1 cut(s)	787
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	112, 430
Eco47I	GGWCC	1 cut(s)	864
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FaeI	CATG	5 cut(s)	331, 552, 679, 689, 859
FatI	CATG	5 cut(s)	327, 548, 675, 685, 855
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	794
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	2 cut(s)	271, 660
GsuI	CTGGAG	3 cut(s)	207, 412, 792
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	514, 680, 758
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	331, 552, 679, 689, 859
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	584
HphI	GGTGA	1 cut(s)	838
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	3 cut(s)	61, 115, 328
Hpy8I	GTNNAC	1 cut(s)	342
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4V	TGCA	6 cut(s)	44, 50, 439, 464, 742, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 520, 569, 653
HpyF3I	CTNAG	2 cut(s)	196, 317
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	331, 552, 679, 689, 859
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	787
LmnI	GCTCC	2 cut(s)	316, 560
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	794
MaeIII	GTNAC	3 cut(s)	361, 448, 541
MalI	GATC	1 cut(s)	789
MboI	GATC	1 cut(s)	787
MboII	GAAGA	4 cut(s)	161, 206, 479, 743
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	3 cut(s)	18, 565, 694
MluCI	AATT	4 cut(s)	82, 152, 456, 813
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	2 cut(s)	242, 538
MnlI	CCTC	4 cut(s)	177, 324, 534, 816
MseI	TTAA	3 cut(s)	81, 576, 608
MslI	CAYNNNNRTG	2 cut(s)	11, 326
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	2 cut(s)	432, 744
MwoI	GCNNNNNNNGC	4 cut(s)	134, 520, 569, 653
NarI	GGCGCC	1 cut(s)	264
NdeII	GATC	1 cut(s)	787
NlaIII	CATG	5 cut(s)	331, 552, 679, 689, 859
NlaIV	GGNNCC	3 cut(s)	265, 312, 693
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	552
PaeI	GCATGC	1 cut(s)	552
PagI	TCATGA	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	55
PctI	GAATGC	2 cut(s)	432, 744
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	592
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	592
PspFI	CCCAGC	2 cut(s)	267, 656
PspN4I	GGNNCC	3 cut(s)	265, 312, 693
PspPI	GGNCC	2 cut(s)	757, 864
PstI	CTGCAG	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	11, 326
SaqAI	TTAA	3 cut(s)	81, 576, 608
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	787
Sau96I	GGNCC	2 cut(s)	757, 864
SchI	GAGTC	1 cut(s)	593
SduI	GDGCHC	3 cut(s)	18, 565, 694
SetI	ASST	9 cut(s)	38, 49, 112, 130, 232, 273, 485, 658, 697
SfcI	CTRYAG	1 cut(s)	437
SfoI	GGCGCC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	864
SmiMI	CAYNNNNRTG	2 cut(s)	11, 326
SpeI	ACTAGT	1 cut(s)	793
SphI	GCATGC	1 cut(s)	552
Sse9I	AATT	4 cut(s)	82, 152, 456, 813
SsiI	CCGC	2 cut(s)	233, 345
SspDI	GGCGCC	1 cut(s)	263
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	794
TaaI	ACNGT	1 cut(s)	823
TaqI	TCGA	1 cut(s)	582
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	4 cut(s)	82, 152, 456, 813
Tru1I	TTAA	3 cut(s)	81, 576, 608
Tru9I	TTAA	3 cut(s)	81, 576, 608
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	626, 674
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	864
XceI	RCATGY	1 cut(s)	552
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.