Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015790

Physical Location & Seq

Genomic Coordinates Reverse (-)

7401087 .. 7401951

Gene Structure 865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCTCAACATCCTCTTTTTCACCTTAACCGTTGCAACAAATTGCAACTGCAAGCCAAGTCCTAAACCAAAGCCAGTCCCAAGTCCTAAGCCCAAGCCGGTCCAATGTCCTCCTCCACCCCGTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCACGCACCCCTGGTTCATCCGGAAACAGCTGTCCTATTGATGCTCTCAAGCTCGGTGTATGTGCAAATGTCTTAAGCAGTCTACTCAACATCCAGTTGGGACAGCCATCCTCTCAACAATGTTGCTCGCTCATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTATGCACTGCTCTGAGGGCTAACGTTCTTGGTATCAACCTTAACGTTCCGATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGAAAGCTTCCATCTGGTTTCCAATGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009628 GO:0009631 GO:0009651 GO:0009682 GO:0009707 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0019867 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033554 GO:0033993 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0070417 GO:0071944 GO:0097305 GO:0098542 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

161

Amino Acids

16.77

Weight (kDa)

9.34

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	78 - 161	2.7e-27	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	78 - 160	1.9e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12470 AT4G12510 AT4G12520 AT4G12530 AT4G22460
rosa_chinensis	RchiOBHm_Chr7g0202781
rosa_laevigata	RLG00000003572
rosa_multiflora	Rmu_sc0002590.1_g000021 Rmu_sc0003429.1_g000014
rosa_roxburghii	Rroxscaffold_3G00254270
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG200800 Rh7CG212200 Rh7DG207800
rosa_wichuraiana	Rw7G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccI	GTMKAC	2 cut(s)	283, 354
AccIII	TCCGGA	1 cut(s)	221
AclI	AACGTT	3 cut(s)	393, 414, 444
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	3 cut(s)	231, 253, 460
AluI	AGCT	3 cut(s)	231, 253, 460
Aor13HI	TCCGGA	1 cut(s)	221
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	359
AspA2I	CCTAGG	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	316, 472
BciT130I	CCWGG	1 cut(s)	213
BfaI	CTAG	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	274
BisI	GCNGC	1 cut(s)	360
BlnI	CCTAGG	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	185, 211, 337
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	2 cut(s)	136, 190
Bse1I	ACTGG	2 cut(s)	113, 295
BseAI	TCCGGA	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	185, 211, 337
BseGI	GGATG	5 cut(s)	48, 218, 291, 308, 333
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	30, 374, 442
BseNI	ACTGG	2 cut(s)	113, 295
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	3 cut(s)	137, 191, 222
BslFI	GGGAC	3 cut(s)	101, 155, 315
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmFI	GGGAC	3 cut(s)	101, 155, 315
BsnI	GGCC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	221
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	29, 375, 441
BspEI	TCCGGA	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	274
BsrFI	RCCGGY	2 cut(s)	136, 190
BsrI	ACTGG	2 cut(s)	113, 295
BssAI	RCCGGY	2 cut(s)	136, 190
BssECI	CCNNGG	3 cut(s)	185, 211, 337
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	185, 337
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	92, 329
BstDEI	CTNAG	4 cut(s)	16, 126, 383, 428
BstF5I	GGATG	5 cut(s)	48, 218, 291, 308, 333
BstHHI	GCGC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 386
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	5 cut(s)	48, 218, 291, 308, 333
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	92, 329
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	2 cut(s)	136, 190
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	365
DdeI	CTNAG	4 cut(s)	16, 126, 383, 428
Eco130I	CCWWGG	2 cut(s)	185, 337
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	185, 337
ErhI	CCWWGG	2 cut(s)	185, 337
FaiI	YATR	2 cut(s)	262, 373
FaqI	GGGAC	3 cut(s)	101, 155, 315
FblI	GTMKAC	2 cut(s)	283, 354
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	5 cut(s)	35, 205, 278, 295, 320
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	3 cut(s)	137, 191, 222
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	2 cut(s)	349, 355
HindII	GTYRAC	2 cut(s)	349, 355
HindIII	AAGCTT	1 cut(s)	458
HpaII	CCGG	3 cut(s)	137, 191, 222
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	284, 349, 355
Hpy188I	TCNGA	2 cut(s)	384, 420
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	3 cut(s)	284, 349, 355
Hpy99I	CGWCG	2 cut(s)	356, 359
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	4 cut(s)	351, 393, 414, 444
HpyCH4V	TGCA	5 cut(s)	74, 84, 90, 266, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 386
HpyF3I	CTNAG	4 cut(s)	16, 126, 383, 428
HpySE526I	ACGT	4 cut(s)	351, 393, 414, 444
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	221
LpnPI	CCDG	8 cut(s)	126, 150, 198, 204, 225, 235, 308, 453
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	4 cut(s)	351, 393, 414, 444
MaeIII	GTNAC	2 cut(s)	193, 449
MboII	GAAGA	1 cut(s)	428
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	7 cut(s)	31, 62, 159, 162, 210, 322, 378
MroI	TCCGGA	1 cut(s)	221
MseI	TTAA	3 cut(s)	65, 275, 411
MspA1I	CMGCKG	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	3 cut(s)	137, 191, 222
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	26, 386
NmuCI	GTSAC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	361
Psp1406I	AACGTT	3 cut(s)	393, 414, 444
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	65, 275, 411
SatI	GCNGC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	232
SgrDI	CGTCGACG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	248, 274
SmoI	CTYRAG	2 cut(s)	248, 274
Sse9I	AATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	185, 337
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	4 cut(s)	354, 396, 417, 447
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	79
Tru1I	TTAA	3 cut(s)	65, 275, 411
Tru9I	TTAA	3 cut(s)	65, 275, 411
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	343
Vha464I	CTTAAG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	139
XmaJI	CCTAGG	1 cut(s)	185
XmiI	GTMKAC	2 cut(s)	283, 354
XspI	CTAG	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.