Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015790

Physical Location & Seq

Genomic Coordinates Reverse (-)

11838960 .. 11839659

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTCTTAAAGACTCTCTTGCGCTCCTCCTTCTCTTCAACATCCTTTTCTTCACTCTCACTACTGCCACTCGCAGTACCAATTGTCCTCCTCCACCAGGAAAACACAACAAACAAAAACCTAGCCCAACACCCACTACCGGGACTTGTCCTAAAGATGCCTTAAAGGTCGGTGTTTGTGTTAACGCACTCAACTTGTTAAACGGTTTGACCCCCGGAACTCCTCCTGTGACTCCATGTTGCAGCCTTATCGAGGGTTTGGTAGATCTTGAAGCTGCGATTTGTCTTTGCACTGCTCTCAAGGCTAGTGTTCTTGGCATCAACCTTACCCTTCCCATCAACCTCAGCTTGCTTCTCAATATTTGCAACAGAGAGGCATCACGTGACTTCCAATTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

133

Amino Acids

14.06

Weight (kDa)

8.47

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	49 - 131	4.8e-21	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	50 - 129	1.8e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12470 AT4G12510 AT4G12520 AT4G12530 AT4G22460
rosa_chinensis	RchiOBHm_Chr7g0202781
rosa_laevigata	RLG00000003572
rosa_multiflora	Rmu_sc0002590.1_g000021 Rmu_sc0003429.1_g000014
rosa_roxburghii	Rroxscaffold_3G00254270
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG200800 Rh7CG212200 Rh7DG207800
rosa_wichuraiana	Rw7G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	4 cut(s)	98, 140, 141, 253
AgsI	TTSAA	2 cut(s)	40, 272
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	275, 348
AluI	AGCT	2 cut(s)	275, 348
ApeKI	GCWGC	2 cut(s)	243, 275
AspLEI	GCGC	1 cut(s)	25
AsuC2I	CCSGG	2 cut(s)	142, 216
BbrPI	CACGTG	1 cut(s)	383
BbvCI	CCTCAGC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	255, 262
BccI	CCATC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	1 cut(s)	99
BcnI	CCSGG	2 cut(s)	142, 216
BfaI	CTAG	2 cut(s)	123, 306
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	2 cut(s)	244, 276
BlsI	GCNGC	2 cut(s)	245, 277
Bme1390I	CCNGG	3 cut(s)	99, 142, 216
BmrFI	CCNGG	3 cut(s)	99, 142, 216
BmsI	GCATC	3 cut(s)	148, 327, 386
Bpu10I	CCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	142, 216
BsaAI	YACGTR	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 140, 141, 253
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	98, 140, 141, 253
BseMII	CTCAG	1 cut(s)	358
BseRI	GAGGAG	3 cut(s)	17, 81, 213
BseXI	GCAGC	2 cut(s)	255, 262
BsiSI	CCGG	2 cut(s)	141, 216
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	4 cut(s)	98, 140, 141, 253
BsmFI	GGGAC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	344
BstENI	CCTNNNNNAGG	2 cut(s)	96, 251
BstF5I	GGATG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	3 cut(s)	97, 140, 214
BstV1I	GCAGC	2 cut(s)	255, 262
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	350
CfoI	GCGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	6 cut(s)	5, 126, 246, 275, 305, 348
CviKI_1	RGCY	6 cut(s)	5, 126, 246, 275, 305, 348
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	383
EcoNI	CCTNNNNNAGG	2 cut(s)	96, 251
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	240
FaiI	YATR	1 cut(s)	238
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	244, 276
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	244, 276
FspBI	CTAG	2 cut(s)	123, 306
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	244, 276
HapII	CCGG	2 cut(s)	141, 216
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	14, 232
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	141, 216
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	41, 341
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	3 cut(s)	243, 291, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	1 cut(s)	23
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	5 cut(s)	84, 111, 154, 229, 240
Lsp1109I	GCAGC	2 cut(s)	255, 262
LweI	GCATC	3 cut(s)	148, 327, 386
MaeI	CTAG	2 cut(s)	123, 306
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	2 cut(s)	229, 383
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	28, 43
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	82, 392
MlyI	GAGTC	2 cut(s)	8, 226
MnlI	CCTC	7 cut(s)	38, 99, 102, 234, 247, 353, 367
MseI	TTAA	5 cut(s)	9, 164, 183, 200, 400
MspI	CCGG	2 cut(s)	141, 216
MspR9I	CCNGG	3 cut(s)	99, 142, 216
MunI	CAATTG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	2 cut(s)	142, 216
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	229, 383
PkrI	GCNGC	2 cut(s)	245, 277
PleI	GAGTC	2 cut(s)	8, 226
PmaCI	CACGTG	1 cut(s)	383
PmlI	CACGTG	1 cut(s)	383
PpsI	GAGTC	2 cut(s)	8, 226
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	97
PspCI	CACGTG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	5 cut(s)	9, 164, 183, 200, 400
SatI	GCNGC	2 cut(s)	244, 276
Sau3AI	GATC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	8, 226
ScrFI	CCNGG	3 cut(s)	99, 142, 216
SetI	ASST	7 cut(s)	124, 171, 277, 327, 345, 350, 385
SfaNI	GCATC	3 cut(s)	148, 327, 386
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	82, 392
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	123, 306
StyD4I	CCNGG	3 cut(s)	97, 140, 214
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	82, 392
Tru1I	TTAA	5 cut(s)	9, 164, 183, 200, 400
Tru9I	TTAA	5 cut(s)	9, 164, 183, 200, 400
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	229, 383
TseI	GCWGC	2 cut(s)	243, 275
Tsp45I	GTSAC	2 cut(s)	229, 383
TspRI	CASTG	1 cut(s)	298
XagI	CCTNNNNNAGG	2 cut(s)	96, 251
XspI	CTAG	2 cut(s)	123, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.