Rh7DG207800

14 kDa proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015790
Physical Location & Seq
Forward (+)
19845908 .. 19847094
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG207800.1

Sequence Viewer

Length: 450 bp
ATGGGTTCCAAAAACACTGCCTCAGTTGCTCTGTTTATCTCAGCACTCAATCTCCTTATTTTTGCCCTGGTCAATGCTTGTGCCTCATGTCCTGCTCCTATTTCCCAACATCACCCAACTCCAAACCGAAAACCGGTACCACGCTTCAGCTCCACAGCCACATGCCCCAGGGATACCCTAAAGTTAGGGGTTTGCGGTAACGTGCTCCGAAGGTTTCTTAATCTTGAAGTTGGTAACCCTCTGGTGAAACCTTGTTGCTCTCTCCTGTATGGCCTTGTTGACCTCGAGGCTGCTGTTTGCCTTTGCACTGCCATCAAAGCCAACGTTTTGGGTGTCAATCTCAACATTCCGGCTGCTCTCAGCCTGCTTCTTAATTGTCTAAAAACAAATCGTTTCAAGAGGGTAAAATTCTTTTGGAGCATCTCTCTGCTACGCCATTTCCTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

149

Amino Acids

16.12

Weight (kDa)

9.76

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 54 - 128 5.6e-19 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 55 - 126 7e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12470 AT4G12510 AT4G12520 AT4G12530 AT4G22460
rosa_chinensis RchiOBHm_Chr7g0202781
rosa_laevigata RLG00000003572
rosa_multiflora Rmu_sc0002590.1_g000021 Rmu_sc0003429.1_g000014
rosa_roxburghii Rroxscaffold_3G00254270
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG200800 Rh7CG212200 Rh7DG207800
rosa_wichuraiana Rw7G017560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 284
Acc65I GGTACC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 1 cut(s) 195
AclI AACGTT 1 cut(s) 324
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 130
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 133
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 2 cut(s) 227, 397
AjnI CCWGG 2 cut(s) 66, 167
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 290, 353
ApoI RAATTY 1 cut(s) 407
AsiGI ACCGGT 1 cut(s) 133
Asp718I GGTACC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 104, 256
AvaI CYCGRG 1 cut(s) 284
BanI GGYRCC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 277, 340
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 2 cut(s) 68, 169
BciVI GTATCC 1 cut(s) 166
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 2 cut(s) 291, 354
BlsI GCNGC 2 cut(s) 292, 355
Bme1390I CCNGG 2 cut(s) 68, 169
BmeT110I CYCGRG 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 7, 138
BmrFI CCNGG 2 cut(s) 68, 169
BmsI GCATC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BsaJI CCNNGG 4 cut(s) 66, 167, 168, 442
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 133
BseBI CCWGG 2 cut(s) 68, 169
BseDI CCNNGG 4 cut(s) 66, 167, 168, 442
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 36, 54, 373
BseXI GCAGC 2 cut(s) 277, 340
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 134, 350
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 207
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 35, 53, 372
BspLI GGNNCC 2 cut(s) 7, 138
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 66, 167, 168, 442
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 2 cut(s) 68, 169
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 22, 40, 359
BstEII GGTNACC 1 cut(s) 233
BstMWI GCNNNNNNNGC 2 cut(s) 26, 317
BstNI CCWGG 2 cut(s) 68, 169
BstNSI RCATGY 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 66, 167
BstV1I GCAGC 2 cut(s) 277, 340
BstXI CCANNNNNNTGG 2 cut(s) 328, 443
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 273
BtsI GCAGTG 2 cut(s) 15, 306
BtsIMutI CAGTG 2 cut(s) 15, 306
Cac8I GCNNGC 1 cut(s) 365
Cfr10I RCCGGY 1 cut(s) 133
Csp6I GTAC 1 cut(s) 137
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 2 cut(s) 87, 162
CviJI RGCY 7 cut(s) 150, 158, 273, 290, 320, 353, 363
CviKI_1 RGCY 7 cut(s) 150, 158, 273, 290, 320, 353, 363
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 3 cut(s) 22, 40, 359
Eco130I CCWWGG 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 66, 167
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 2 cut(s) 90, 165
FaiI YATR 3 cut(s) 88, 163, 270
FatI CATG 2 cut(s) 86, 161
Fnu4HI GCNGC 2 cut(s) 291, 354
Fsp4HI GCNGC 2 cut(s) 291, 354
GluI GCNGC 2 cut(s) 291, 354
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 134, 350
Hin1II CATG 2 cut(s) 90, 165
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HpaII CCGG 2 cut(s) 134, 350
HphI GGTGA 2 cut(s) 104, 256
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 2 cut(s) 224, 397
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 2 cut(s) 201, 324
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 317
HpyF3I CTNAG 3 cut(s) 22, 40, 359
HpySE526I ACGT 2 cut(s) 201, 324
Hsp92II CATG 2 cut(s) 90, 165
KpnI GGTACC 1 cut(s) 140
LmnI GCTCC 4 cut(s) 100, 155, 210, 417
Lsp1109I GCAGC 2 cut(s) 277, 340
LweI GCATC 1 cut(s) 429
MaeII ACGT 2 cut(s) 201, 324
MaeIII GTNAC 2 cut(s) 197, 233
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 373, 407
MnlI CCTC 6 cut(s) 31, 94, 249, 280, 293, 393
MseI TTAA 2 cut(s) 219, 372
MspI CCGG 2 cut(s) 134, 350
MspR9I CCNGG 2 cut(s) 68, 169
MvaI CCWGG 2 cut(s) 68, 169
MwoI GCNNNNNNNGC 2 cut(s) 26, 317
NlaIII CATG 2 cut(s) 90, 165
NlaIV GGNNCC 2 cut(s) 7, 138
NspI RCATGY 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 284
PasI CCCWGGG 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 133
PkrI GCNGC 2 cut(s) 292, 355
Psp1406I AACGTT 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 66, 167
PspEI GGTNACC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 66, 167
PspN4I GGNNCC 2 cut(s) 7, 138
PspXI VCTCGAGB 1 cut(s) 284
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 219, 372
SatI GCNGC 2 cut(s) 291, 354
ScrFI CCNGG 2 cut(s) 68, 169
SduI GDGCHC 1 cut(s) 207
SetI ASST 6 cut(s) 152, 204, 215, 253, 285, 327
SfaNI GCATC 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 373, 407
SsiI CCGC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 66, 167
StyI CCWWGG 1 cut(s) 442
TaiI ACGT 2 cut(s) 204, 327
TaqI TCGA 1 cut(s) 285
TasI AATT 2 cut(s) 373, 407
Tru1I TTAA 2 cut(s) 219, 372
Tru9I TTAA 2 cut(s) 219, 372
TscAI CASTG 2 cut(s) 22, 313
TseI GCWGC 2 cut(s) 290, 353
TspRI CASTG 2 cut(s) 22, 313
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.