AT4G12510

14 kDa proline-rich protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
7417068 .. 7417873
806 bp
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UTR
Exon/CDS
Intron
AT4G12510.1

Sequence Viewer

Length: 390 bp
ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCTTTTTTTCACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCCACCCCTAAACCCAAACCTAAGCCCAAGTCCACCGGAAGCTGCCCTAAAGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTCTCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCCTCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAAGTTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCAAGAAGGTTCCTTCTGGTTTCGTATGTGCTTGA

Protein Analysis

129

Amino Acids

13.26

Weight (kDa)

9.3

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 38 - 128 6.2e-08 Probable lipid transfer
Hydrophob_seed PF14547 46 - 129 2.5e-26 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 46 - 128 2.3e-16 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015790)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 72, 81, 267, 282
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 12, 195
AgsI TTSAA 2 cut(s) 9, 46
AluBI AGCT 2 cut(s) 135, 157
AluI AGCT 2 cut(s) 135, 157
Alw26I GTCTC 2 cut(s) 278, 331
AlwI GGATC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 87, 135, 263
ApoI RAATTY 2 cut(s) 12, 195
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 1 cut(s) 170
BbvI GCAGC 3 cut(s) 74, 122, 250
BcoDI GTCTC 2 cut(s) 278, 331
BfmI CTRYAG 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 4 cut(s) 88, 136, 264, 267
BlsI GCNGC 4 cut(s) 89, 137, 265, 268
BmiI GGNNCC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 3 cut(s) 137, 164, 278
BsaWI WCCGGW 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 3 cut(s) 74, 122, 250
BsgI GTGCAG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 278, 331
BsmBI CGTCTC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 184, 253
BspACI CCGC 4 cut(s) 72, 81, 267, 282
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 366
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 215
BssMI GATC 2 cut(s) 184, 253
BstDEI CTNAG 2 cut(s) 114, 332
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 2 cut(s) 187, 256
BstMAI GTCTC 2 cut(s) 278, 331
BstMBI GATC 2 cut(s) 184, 253
BstMWI GCNNNNNNNGC 2 cut(s) 87, 290
BstNSI RCATGY 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 74, 122, 250
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 222
CfoI GCGC 1 cut(s) 170
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 1 cut(s) 75
DdeI CTNAG 2 cut(s) 114, 332
DpnI GATC 2 cut(s) 186, 255
DpnII GATC 2 cut(s) 184, 253
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 1 cut(s) 78
FaiI YATR 2 cut(s) 76, 382
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 4 cut(s) 88, 136, 264, 267
Fsp4HI GCNGC 4 cut(s) 88, 136, 264, 267
GlaI GCGC 1 cut(s) 169
GluI GCNGC 4 cut(s) 88, 136, 264, 267
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HpaII CCGG 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 3 cut(s) 347, 355, 378
HpyCH4V TGCA 2 cut(s) 90, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 290
HpyF3I CTNAG 2 cut(s) 114, 332
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 184, 253
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 3 cut(s) 142, 228, 357
Lsp1109I GCAGC 3 cut(s) 74, 122, 250
MalI GATC 2 cut(s) 186, 255
MboI GATC 2 cut(s) 184, 253
MboII GAAGA 2 cut(s) 179, 332
MflI RGATCY 1 cut(s) 184
MluCI AATT 2 cut(s) 12, 195
MnlI CCTC 4 cut(s) 31, 47, 248, 253
MseI TTAA 3 cut(s) 65, 309, 315
MspI CCGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 87, 290
NdeII GATC 2 cut(s) 184, 253
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 366
NmeAIII GCCGAG 1 cut(s) 138
NspI RCATGY 1 cut(s) 78
PkrI GCNGC 4 cut(s) 89, 137, 265, 268
PshBI ATTAAT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 366
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 184
SaqAI TTAA 3 cut(s) 65, 309, 315
SatI GCNGC 4 cut(s) 88, 136, 264, 267
Sau3AI GATC 2 cut(s) 184, 253
SetI ASST 4 cut(s) 115, 137, 159, 366
SfcI CTRYAG 1 cut(s) 88
SmlI CTYRAG 3 cut(s) 152, 179, 257
SmoI CTYRAG 3 cut(s) 152, 179, 257
Sse9I AATT 2 cut(s) 12, 195
SsiI CCGC 4 cut(s) 72, 81, 267, 282
TasI AATT 2 cut(s) 12, 195
TauI GCSGC 1 cut(s) 269
Tru1I TTAA 3 cut(s) 65, 309, 315
Tru9I TTAA 3 cut(s) 65, 309, 315
TscAI CASTG 1 cut(s) 222
TseI GCWGC 3 cut(s) 87, 135, 263
TspRI CASTG 1 cut(s) 222
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 2 cut(s) 12, 195
XceI RCATGY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.