Rmu_sc0003429.1_g000014

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003429.1
OG0015790
Physical Location & Seq
Forward (+)
75634 .. 76044
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003429.1_g000014.1.cds

Sequence Viewer

Length: 411 bp
atgggttccaaaaacactgcctcagttgctctgtttatctcagcactcaatctccttatttttgccctggtcaatgcttgtgcctcatgtcctgctcctatttcccaacatcacccaactccaaaccgaaaaccggtaccacgcttcagctccacagccgcatgccccagggataccctaaagttaggggtctgcggtaacttgctccgaaggttgcttaatcttgaagttggtaaccctctggtgaaaccttgttgctctctcctgtatggccttgttgacctcgaggctgctgtttgcctttgtactgccatcaagccaacgttttgggtgtcaatctcaacattccggctgctctcagcctgcttcttaatgtttgtgggaacaaaggttccgaaaggataccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

136

Amino Acids

14.59

Weight (kDa)

9.37

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12470 AT4G12510 AT4G12520 AT4G12530 AT4G22460
rosa_chinensis RchiOBHm_Chr7g0202781
rosa_laevigata RLG00000003572
rosa_multiflora Rmu_sc0002590.1_g000021 Rmu_sc0003429.1_g000014
rosa_roxburghii Rroxscaffold_3G00254270
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG200800 Rh7CG212200 Rh7DG207800
rosa_wichuraiana Rw7G017560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 284
Acc65I GGTACC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 2 cut(s) 159, 195
AclI AACGTT 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 130
AfaI GTAC 2 cut(s) 138, 307
AfiI CCNNNNNNNGG 1 cut(s) 133
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 2 cut(s) 66, 167
AloI GAACNNNNNNTCC 4 cut(s) 375, 376, 407, 408
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 290, 352
AsiGI ACCGGT 1 cut(s) 133
Asp718I GGTACC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 104, 256
AvaI CYCGRG 1 cut(s) 284
BanI GGYRCC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 277, 339
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 2 cut(s) 68, 169
BciVI GTATCC 2 cut(s) 166, 395
BfuI GTATCC 2 cut(s) 166, 395
BisI GCNGC 3 cut(s) 159, 291, 353
BlsI GCNGC 3 cut(s) 160, 292, 354
Bme1390I CCNGG 2 cut(s) 68, 169
BmeT110I CYCGRG 1 cut(s) 284
BmiI GGNNCC 3 cut(s) 7, 138, 393
BmrFI CCNGG 2 cut(s) 68, 169
BsaJI CCNNGG 3 cut(s) 66, 167, 168
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 133
BseBI CCWGG 2 cut(s) 68, 169
BseDI CCNNGG 3 cut(s) 66, 167, 168
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 36, 54, 372
BseXI GCAGC 2 cut(s) 277, 339
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 134, 349
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 284
BspACI CCGC 2 cut(s) 159, 195
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 35, 53, 371
BspLI GGNNCC 3 cut(s) 7, 138, 393
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 66, 167, 168
Bst2UI CCWGG 2 cut(s) 68, 169
BstC8I GCNNGC 2 cut(s) 163, 364
BstDEI CTNAG 3 cut(s) 22, 40, 358
BstEII GGTNACC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 2 cut(s) 68, 169
BstNSI RCATGY 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 66, 167
BstV1I GCAGC 2 cut(s) 277, 339
BstXI CCANNNNNNTGG 1 cut(s) 327
BsuI GTATCC 2 cut(s) 166, 395
BsuRI GGCC 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 163, 364
Cfr10I RCCGGY 1 cut(s) 133
Csp6I GTAC 2 cut(s) 137, 306
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 2 cut(s) 87, 162
CviJI RGCY 7 cut(s) 150, 158, 273, 290, 319, 352, 362
CviKI_1 RGCY 7 cut(s) 150, 158, 273, 290, 319, 352, 362
CviQI GTAC 2 cut(s) 137, 306
DdeI CTNAG 3 cut(s) 22, 40, 358
Eco57I CTGAAG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 66, 167
FaeI CATG 2 cut(s) 90, 165
FaiI YATR 3 cut(s) 88, 163, 270
FatI CATG 2 cut(s) 86, 161
Fnu4HI GCNGC 3 cut(s) 159, 291, 353
Fsp4HI GCNGC 3 cut(s) 159, 291, 353
GluI GCNGC 3 cut(s) 159, 291, 353
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 134, 349
Hin1II CATG 2 cut(s) 90, 165
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HpaII CCGG 2 cut(s) 134, 349
HphI GGTGA 2 cut(s) 104, 256
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 209, 396
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 3 cut(s) 22, 40, 358
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 2 cut(s) 90, 165
KpnI GGTACC 1 cut(s) 140
LmnI GCTCC 3 cut(s) 100, 155, 210
Lsp1109I GCAGC 2 cut(s) 277, 339
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 197, 233
MnlI CCTC 5 cut(s) 31, 94, 249, 280, 293
MseI TTAA 2 cut(s) 219, 371
MspI CCGG 2 cut(s) 134, 349
MspR9I CCNGG 2 cut(s) 68, 169
MvaI CCWGG 2 cut(s) 68, 169
MwoI GCNNNNNNNGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 90, 165
NlaIV GGNNCC 3 cut(s) 7, 138, 393
NspI RCATGY 1 cut(s) 165
PaeI GCATGC 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 284
PasI CCCWGGG 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 133
PkrI GCNGC 3 cut(s) 160, 292, 354
Psp1406I AACGTT 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 66, 167
PspEI GGTNACC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 66, 167
PspN4I GGNNCC 3 cut(s) 7, 138, 393
PspXI VCTCGAGB 1 cut(s) 284
RsaI GTAC 2 cut(s) 138, 307
RsaNI GTAC 2 cut(s) 137, 306
SaqAI TTAA 2 cut(s) 219, 371
SatI GCNGC 3 cut(s) 159, 291, 353
ScrFI CCNGG 2 cut(s) 68, 169
SetI ASST 6 cut(s) 152, 215, 253, 285, 326, 393
Sfr274I CTCGAG 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 165
SsiI CCGC 2 cut(s) 159, 195
StyD4I CCNGG 2 cut(s) 66, 167
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 285
TatI WGTACW 1 cut(s) 305
TauI GCSGC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 219, 371
Tru9I TTAA 2 cut(s) 219, 371
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 290, 352
TspRI CASTG 1 cut(s) 22
XceI RCATGY 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.