AT4G12600

Ribosomal protein L7Ae L30e S12e Gadd45 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013069
Physical Location & Seq
Forward (+)
7453196 .. 7454546
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12600.1

Sequence Viewer

Length: 387 bp
ATGACGGTAGAAGGAGTGAACCCTAAGGCGTATCCGTTAGCTGATTCTCAGTTATCGATAACGATTCTTGATCTTGTTCAACAAGCTACGAATTACAAACAGTTAAAGAAAGGAGCTAATGAAGCTACCAAGACATTGAACCGTGGGATCTCTGAGTTCATTGTTATGGCTGCTGATACTGAGCCTCTCGAGATTCTTCTTCATCTTCCTCTTCTTGCTGAAGATAAGAATGTGCCGTATGTGTTTGTGCCATCGAAACAAGCCCTTGGAAGAGCATGTGATGTAACCAGACCCGTGATCGCTTGTTCCGTTACATCAAACGAGGCTAGTCAGTTGAAATCTCAAATTCAGCACCTTAAGGATGCCATTGAGAAGCTCCTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03040 map03008 map03040
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

128

Amino Acids

14.0

Weight (kDa)

6.09

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 23 - 111 1e-26 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12600 AT4G22380 AT5G20160
fragaria_vesca FvH4_1g03460
malus_domestica MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis pycom02g02760 pycom15g15610
rosa_chinensis RchiOBHm_Chr2g0088681
rosa_laevigata RLG00000015975
rosa_multiflora Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii Rroxscaffold_2G00152410
rosa_rugosa Rorug01G0485800
rosa_samantha Rh2AG041300
rosa_wichuraiana Rw2G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 3 cut(s) 80, 139, 337
AluBI AGCT 5 cut(s) 41, 86, 116, 125, 376
AluI AGCT 5 cut(s) 41, 86, 116, 125, 376
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 24
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 220
BciVI GTATCC 1 cut(s) 42
BfaI CTAG 2 cut(s) 327, 385
BfrI CTTAAG 1 cut(s) 356
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 188
BmsI GCATC 1 cut(s) 352
Bsa29I ATCGAT 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 142, 265
Bse21I CCTNAGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 142, 265
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 62, 144, 171
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 157
BshVI ATCGAT 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 3 cut(s) 70, 147, 297
BspCNI CTCAG 3 cut(s) 61, 145, 172
BspDI ATCGAT 1 cut(s) 56
BspPI GGATC 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 142, 265
BssMI GATC 3 cut(s) 70, 147, 297
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 7, 102, 143
Bst6I CTCTTC 2 cut(s) 216, 265
BstAFI CTTAAG 1 cut(s) 356
BstDEI CTNAG 4 cut(s) 24, 48, 153, 180
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 3 cut(s) 73, 150, 300
BstMBI GATC 3 cut(s) 70, 147, 297
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 56
Bsu36I CCTNAGG 1 cut(s) 24
BsuI GTATCC 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 367
ClaI ATCGAT 1 cut(s) 56
CviAII CATG 1 cut(s) 276
CviJI RGCY 9 cut(s) 41, 86, 116, 125, 170, 184, 263, 326, 376
CviKI_1 RGCY 9 cut(s) 41, 86, 116, 125, 170, 184, 263, 326, 376
DdeI CTNAG 4 cut(s) 24, 48, 153, 180
DpnI GATC 3 cut(s) 72, 149, 299
DpnII GATC 3 cut(s) 70, 147, 297
Eam1104I CTCTTC 2 cut(s) 216, 265
EarI CTCTTC 2 cut(s) 216, 265
Eco130I CCWWGG 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 279
FaiI YATR 3 cut(s) 167, 240, 277
FatI CATG 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 2 cut(s) 327, 385
GluI GCNGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 279
HinfI GANTC 3 cut(s) 44, 64, 193
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 3 cut(s) 68, 188, 190
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 3 cut(s) 7, 102, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 4 cut(s) 24, 48, 153, 180
Hsp92II CATG 1 cut(s) 279
Kzo9I GATC 3 cut(s) 70, 147, 297
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 113, 381
LpnPI CCDG 1 cut(s) 301
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 327, 385
MaeIII GTNAC 2 cut(s) 283, 310
MalI GATC 3 cut(s) 72, 149, 299
MboI GATC 3 cut(s) 70, 147, 297
MboII GAAGA 6 cut(s) 188, 191, 197, 203, 233, 282
MflI RGATCY 1 cut(s) 147
MluCI AATT 2 cut(s) 91, 345
MnlI CCTC 3 cut(s) 195, 219, 316
MseI TTAA 2 cut(s) 104, 357
MslI CAYNNNNRTG 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 356
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 3 cut(s) 70, 147, 297
NlaIII CATG 1 cut(s) 279
NspI RCATGY 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 3 cut(s) 44, 64, 193
PkrI GCNGC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 104, 357
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 3 cut(s) 70, 147, 297
SetI ASST 6 cut(s) 43, 88, 118, 127, 357, 378
SfaNI GCATC 1 cut(s) 352
Sfr274I CTCGAG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 188, 356
SmoI CTYRAG 2 cut(s) 188, 356
Sse9I AATT 2 cut(s) 91, 345
SspMI CTAG 2 cut(s) 327, 385
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 3 cut(s) 7, 102, 143
TaqI TCGA 3 cut(s) 56, 189, 254
TasI AATT 2 cut(s) 91, 345
TfiI GAWTC 3 cut(s) 44, 64, 193
Tru1I TTAA 2 cut(s) 104, 357
Tru9I TTAA 2 cut(s) 104, 357
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 135, 148, 191
TspGWI ACGGA 2 cut(s) 24, 298
Vha464I CTTAAG 1 cut(s) 356
XapI RAATTY 1 cut(s) 345
XceI RCATGY 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 2 cut(s) 327, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.