FvH4_1g03460

NHP2-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013069
Physical Location & Seq
Reverse (-)
1901596 .. 1903418
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03460.t1

Sequence Viewer

Length: 387 bp
ATGACCGGAGAAGCAGTGAACCCTAAAGCTTACCCCTTGGCCGATGGCCAGCTCACCATCACCATTCTCGACCTGGTTCAGCAAGCCTTCAACTTCAAGCAGCTCAAAAAGGGCGCCAATGAAGCTACTAAGACCCTGAACAGAGGTATTGCTGAGTTCATTGTGATGGCTGCCGATACCGAGCCGCTGGAGATCCTTCTTCATCTTCCCCTGTTGGCTGAAGATAAGAATGTGCCCTATGTGTTCGTGCCTTCAAAGCAAGCTCTTGGACGAGCATGTGGTGTCTCAAGACCTGTCATTGCTTGTTCTGTGACAACAAATGAGGGCAGCCAAATGAAAGTCCAAATACAACAGCTCAAGGATGCCATTGAGAAGCTCCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03040 map03008 map03040
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

129

Amino Acids

13.92

Weight (kDa)

6.57

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 23 - 111 7.7e-27 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12600 AT4G22380 AT5G20160
fragaria_vesca FvH4_1g03460
malus_domestica MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis pycom02g02760 pycom15g15610
rosa_chinensis RchiOBHm_Chr2g0088681
rosa_laevigata RLG00000015975
rosa_multiflora Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii Rroxscaffold_2G00152410
rosa_rugosa Rorug01G0485800
rosa_samantha Rh2AG041300
rosa_wichuraiana Rw2G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 2 cut(s) 39, 46
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 114
AgsI TTSAA 3 cut(s) 91, 97, 255
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 7 cut(s) 29, 52, 103, 125, 263, 355, 376
AluI AGCT 7 cut(s) 29, 52, 103, 125, 263, 355, 376
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 1 cut(s) 187
AoxI GGCC 2 cut(s) 39, 46
ApeKI GCWGC 3 cut(s) 100, 170, 327
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 46, 52
BaeGI GKGCMC 1 cut(s) 237
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 112, 157, 339
BccI CCATC 3 cut(s) 38, 65, 160
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 4 cut(s) 101, 171, 185, 328
BlsI GCNGC 4 cut(s) 102, 172, 186, 329
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 271, 341
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 3 cut(s) 112, 157, 339
BshFI GGCC 2 cut(s) 41, 48
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 2 cut(s) 41, 48
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 185
BspANI GGCC 2 cut(s) 41, 48
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 50, 84, 261
BstDEI CTNAG 2 cut(s) 129, 153
BstF5I GGATG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 122, 256
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 112, 157, 339
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 2 cut(s) 41, 48
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 50, 84, 261
CfoI GCGC 1 cut(s) 116
CsiI ACCWGGT 1 cut(s) 72
CviAII CATG 1 cut(s) 276
DdeI CTNAG 2 cut(s) 129, 153
DinI GGCGCC 1 cut(s) 115
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EaeI YGGCCR 2 cut(s) 39, 46
Eco130I CCWWGG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 279
FaiI YATR 2 cut(s) 240, 277
FatI CATG 1 cut(s) 275
Fnu4HI GCNGC 4 cut(s) 101, 171, 185, 328
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 101, 171, 185, 328
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 101, 171, 185, 328
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 2 cut(s) 41, 48
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 279
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 27
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 46, 52
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 68, 288
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 97, 206, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 256
HpyF3I CTNAG 2 cut(s) 129, 153
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 279
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 8 cut(s) 19, 59, 62, 86, 149, 173, 224, 306
Lsp1109I GCAGC 3 cut(s) 112, 157, 339
LweI GCATC 1 cut(s) 352
MabI ACCWGGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 3 cut(s) 191, 197, 233
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 114
MnlI CCTC 2 cut(s) 137, 316
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 122, 256
NarI GGCGCC 1 cut(s) 114
NdeII GATC 1 cut(s) 192
NlaIII CATG 1 cut(s) 279
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 279
PkrI GCNGC 4 cut(s) 102, 172, 186, 329
PluTI GGCGCC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 4 cut(s) 101, 171, 185, 328
Sau3AI GATC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 1 cut(s) 352
SfoI GGCGCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 286, 356
SmoI CTYRAG 2 cut(s) 286, 356
SsiI CCGC 1 cut(s) 185
SspDI GGCGCC 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 1 cut(s) 69
TauI GCSGC 1 cut(s) 187
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 100, 170, 327
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 135, 148, 191, 350
TspRI CASTG 1 cut(s) 21
XceI RCATGY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.