AT4G22380

NHP2-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013069
Physical Location & Seq
Reverse (-)
11811731 .. 11813000
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22380.1

Sequence Viewer

Length: 387 bp
ATGACGGGAGAGGTAGTGAACCCTAAGGCGTATCCGTTAGCAGATTCTCAGCTTTCGATAACAATAATGGATCTTGTTCAACAAGCTACTAACTACAAGCAGCTTAAGAAGGGAGCTAATGAAGCTACCAAAACATTGAACCGTGGAATCTCTGAGTTCGTTGTTATGGCTGCTGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGTGGAGTAACAAGACCTGTTATTGCTTGTTCAGTGACATCGAATGAGGCAAGCCAGTTGAAATCGCAGATTCAGCATCTCAAGGATGCAATTGAGAAGCTCCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03040 map03008 map03040
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

128

Amino Acids

13.92

Weight (kDa)

6.72

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 22 - 111 1.2e-27 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12600 AT4G22380 AT5G20160
fragaria_vesca FvH4_1g03460
malus_domestica MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis pycom02g02760 pycom15g15610
rosa_chinensis RchiOBHm_Chr2g0088681
rosa_laevigata RLG00000015975
rosa_multiflora Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii Rroxscaffold_2G00152410
rosa_rugosa Rorug01G0485800
rosa_samantha Rh2AG041300
rosa_wichuraiana Rw2G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AfaI GTAC 1 cut(s) 249
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 3 cut(s) 80, 139, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 6 cut(s) 52, 86, 103, 116, 125, 376
AluI AGCT 6 cut(s) 52, 86, 103, 116, 125, 376
AlwI GGATC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 100, 170
AsuII TTCGAA 1 cut(s) 254
AxyI CCTNAGG 1 cut(s) 24
BbvI GCAGC 2 cut(s) 112, 157
BciVI GTATCC 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 104
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 101, 171
BlsI GCNGC 2 cut(s) 102, 172
BmsI GCATC 3 cut(s) 166, 352, 361
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 209, 341
BsaJI CCNNGG 1 cut(s) 142
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 331
Bse21I CCTNAGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 62, 144
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 112, 157
Bsp119I TTCGAA 1 cut(s) 254
Bsp143I GATC 2 cut(s) 70, 381
BspCNI CTCAG 2 cut(s) 61, 145
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 254
BspTI CTTAAG 1 cut(s) 104
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 70, 381
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 265
BstAFI CTTAAG 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 216, 328
BstDEI CTNAG 3 cut(s) 24, 48, 153
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 2 cut(s) 73, 384
BstMBI GATC 2 cut(s) 70, 381
BstMWI GCNNNNNNNGC 3 cut(s) 122, 176, 349
BstNSI RCATGY 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 112, 157
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 24
BsuI GTATCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 216, 328
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 276
CviJI RGCY 8 cut(s) 52, 86, 103, 116, 125, 170, 330, 376
CviKI_1 RGCY 8 cut(s) 52, 86, 103, 116, 125, 170, 330, 376
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 3 cut(s) 24, 48, 153
DpnI GATC 2 cut(s) 72, 383
DpnII GATC 2 cut(s) 70, 381
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 24
FaeI CATG 1 cut(s) 279
FaiI YATR 4 cut(s) 167, 238, 240, 277
FatI CATG 1 cut(s) 275
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 101, 171
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 101, 171
GluI GCNGC 2 cut(s) 101, 171
Hin1II CATG 1 cut(s) 279
HinfI GANTC 4 cut(s) 44, 147, 193, 346
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 103, 261
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 176, 349
HpyF3I CTNAG 3 cut(s) 24, 48, 153
Hsp92II CATG 1 cut(s) 279
Kzo9I GATC 2 cut(s) 70, 381
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 113, 381
LpnPI CCDG 2 cut(s) 306, 344
Lsp1109I GCAGC 2 cut(s) 112, 157
LweI GCATC 3 cut(s) 166, 352, 361
MaeIII GTNAC 2 cut(s) 283, 310
MalI GATC 2 cut(s) 72, 383
MboI GATC 2 cut(s) 70, 381
MboII GAAGA 5 cut(s) 188, 191, 197, 233, 282
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 1 cut(s) 70
MluCI AATT 1 cut(s) 366
MnlI CCTC 2 cut(s) 4, 316
MseI TTAA 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 104
MunI CAATTG 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 122, 176, 349
NdeI CATATG 1 cut(s) 238
NdeII GATC 2 cut(s) 70, 381
NlaIII CATG 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 265
PfeI GAWTC 4 cut(s) 44, 147, 193, 346
PkrI GCNGC 2 cut(s) 102, 172
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 101, 171
Sau3AI GATC 2 cut(s) 70, 381
SetI ASST 9 cut(s) 15, 54, 88, 105, 118, 127, 253, 295, 378
SfaNI GCATC 3 cut(s) 166, 352, 361
SfuI TTCGAA 1 cut(s) 254
SmlI CTYRAG 3 cut(s) 104, 188, 356
SmoI CTYRAG 3 cut(s) 104, 188, 356
Sse9I AATT 1 cut(s) 366
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 3 cut(s) 56, 254, 317
TasI AATT 1 cut(s) 366
TfiI GAWTC 4 cut(s) 44, 147, 193, 346
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 100, 170
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 135, 191
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 315
Vha464I CTTAAG 1 cut(s) 104
XceI RCATGY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.