Rroxscaffold_2G00152410

NHP2-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013069
Physical Location & Seq
Forward (+)
89374342 .. 89376075
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152410.1

Sequence Viewer

Length: 387 bp
ATGACCGGAGAAGCAGTCAACCCTAAAGCTTACCCCTTGGCCGATGGTCAGCTCACCATCACCATTCTCGACTTGGTTCAGCAAGCCTTCAACTTCAAGCAGCTCAAAAAGGGCGCCAACGAAGCTACTAAGACCCTGAACAGAGGTATTGCTGAGTTCATTGTGATGGCTGCGGACACCGAGCCGCTTGAGATTCTTCTTCATCTTCCCCTCTTGGCTGAAGATAAGAATGTGCCCTATGTGTTCGTGCCTTCGAAGCAAGCTCTTGGACGAGCCTGTGGTGTCTCCAGACCTGTCATTGCTTGTTCTGTGACAACAAATGAGGGCAGCCAAATGAAAGTCCAAATACAACAGCTCAAGGATGCCATTGAGAAGCTCCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03040 map03008 map03040
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

128

Amino Acids

13.92

Weight (kDa)

6.57

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 23 - 111 7.7e-27 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12600 AT4G22380 AT5G20160
fragaria_vesca FvH4_1g03460
malus_domestica MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis pycom02g02760 pycom15g15610
rosa_chinensis RchiOBHm_Chr2g0088681
rosa_laevigata RLG00000015975
rosa_multiflora Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii Rroxscaffold_2G00152410
rosa_rugosa Rorug01G0485800
rosa_samantha Rh2AG041300
rosa_wichuraiana Rw2G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 2 cut(s) 173, 185
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 114
AgsI TTSAA 2 cut(s) 91, 97
AluBI AGCT 7 cut(s) 29, 52, 103, 125, 263, 355, 376
AluI AGCT 7 cut(s) 29, 52, 103, 125, 263, 355, 376
Alw26I GTCTC 1 cut(s) 289
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 100, 170, 327
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 46, 52
AsuII TTCGAA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 112, 157, 339
BccI CCATC 3 cut(s) 38, 65, 160
BcoDI GTCTC 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 4 cut(s) 101, 171, 185, 328
BlsI GCNGC 4 cut(s) 102, 172, 186, 329
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 209, 341
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 3 cut(s) 112, 157, 339
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 237
BspACI CCGC 2 cut(s) 173, 185
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 84, 261
BstDEI CTNAG 2 cut(s) 129, 153
BstF5I GGATG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 122, 256
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 112, 157, 339
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 84, 261
CfoI GCGC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 129, 153
DinI GGCGCC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 1 cut(s) 240
Fnu4HI GCNGC 4 cut(s) 101, 171, 185, 328
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 101, 171, 185, 328
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 101, 171, 185, 328
GsuI CTGGAG 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 46, 52
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 68, 288
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 97, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 256
HpyF3I CTNAG 2 cut(s) 129, 153
Hsp92I GRCGYC 1 cut(s) 114
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 5 cut(s) 19, 149, 289, 301, 306
Lsp1109I GCAGC 3 cut(s) 112, 157, 339
LweI GCATC 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 310
MboII GAAGA 4 cut(s) 188, 191, 197, 233
MhlI GDGCHC 1 cut(s) 237
Mly113I GGCGCC 1 cut(s) 114
MnlI CCTC 3 cut(s) 137, 221, 316
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 122, 256
NarI GGCGCC 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 254
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 102, 172, 186, 329
PluTI GGCGCC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 4 cut(s) 101, 171, 185, 328
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 31, 54, 105, 127, 148, 265, 295, 357, 378
SfaNI GCATC 1 cut(s) 352
SfoI GGCGCC 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 188, 356
SmoI CTYRAG 2 cut(s) 188, 356
SsiI CCGC 2 cut(s) 173, 185
SspDI GGCGCC 1 cut(s) 113
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 2 cut(s) 69, 254
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 1 cut(s) 193
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 100, 170, 327
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 148, 191, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.