AT5G20160

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013069
Physical Location & Seq
Reverse (-)
6803694 .. 6805226
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20160.1

Sequence Viewer

Length: 387 bp
ATGACCGGAGAAGTCGTCAACCCTAAAGCGTATCCGCTTGCAGATTCTCAGTTATCGATAACAATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGCTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTTGTCATGGCTGCAGATGCTGAGCCTCTAGAGATTCTTCTTCATCTTCCCCTACTTGCTGAGGATAAGAATGTTCCTTATGTCTTTGTGCCTTCAAAGCAAGCCTTGGGAAGAGCCTGTGGTGTGACTAGACCTGTTATCGCTTGTTCAGTCACATCTAACGAAGCTAGTCAATTGAAATCACAGATTCAACATCTCAAGGATGCTATTGAGAAGCTTCTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03040 map03008 map03040
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

128

Amino Acids

13.9

Weight (kDa)

6.72

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 23 - 111 1.9e-27 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12600 AT4G22380 AT5G20160
fragaria_vesca FvH4_1g03460
malus_domestica MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis pycom02g02760 pycom15g15610
rosa_chinensis RchiOBHm_Chr2g0088681
rosa_laevigata RLG00000015975
rosa_multiflora Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii Rroxscaffold_2G00152410
rosa_rugosa Rorug01G0485800
rosa_samantha Rh2AG041300
rosa_wichuraiana Rw2G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AgsI TTSAA 4 cut(s) 80, 255, 337, 350
AluBI AGCT 5 cut(s) 86, 103, 125, 326, 376
AluI AGCT 5 cut(s) 86, 103, 125, 326, 376
AlwNI CAGNNNCTG 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 100, 170
BbsI GAAGAC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 112, 157
BciVI GTATCC 1 cut(s) 42
BfaI CTAG 3 cut(s) 188, 288, 327
BfmI CTRYAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 101, 171
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 2 cut(s) 102, 172
BmsI GCATC 2 cut(s) 166, 352
BpiI GAAGAC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 89, 341
Bsa29I ATCGAT 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 62, 171, 210
BseXI GCAGC 2 cut(s) 112, 157
BshVI ATCGAT 1 cut(s) 56
BsiSI CCGG 1 cut(s) 6
Bsp143I GATC 1 cut(s) 381
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 3 cut(s) 61, 172, 211
BspDI ATCGAT 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 39, 261
BstDEI CTNAG 3 cut(s) 48, 180, 219
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 1 cut(s) 384
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 3 cut(s) 122, 176, 256
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 112, 157
BstV2I GAAGAC 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 56
BsuI GTATCC 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 56
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 39, 261
CaiI CAGNNNCTG 1 cut(s) 179
ClaI ATCGAT 1 cut(s) 56
CviAII CATG 1 cut(s) 166
CviJI RGCY 9 cut(s) 86, 103, 125, 170, 184, 263, 275, 326, 376
CviKI_1 RGCY 9 cut(s) 86, 103, 125, 170, 184, 263, 275, 326, 376
DdeI CTNAG 3 cut(s) 48, 180, 219
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 169
FaiI YATR 2 cut(s) 167, 240
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 101, 171
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 101, 171
FspBI CTAG 3 cut(s) 188, 288, 327
GluI GCNGC 2 cut(s) 101, 171
HapII CCGG 1 cut(s) 6
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 5 cut(s) 44, 133, 147, 193, 346
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 154, 381
Hpy188III TCNNGA 3 cut(s) 68, 106, 188
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 103, 261
HpyCH4V TGCA 2 cut(s) 41, 173
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 176, 256
HpyF3I CTNAG 3 cut(s) 48, 180, 219
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 381
LguI GCTCTTC 1 cut(s) 265
LpnPI CCDG 3 cut(s) 19, 289, 306
Lsp1109I GCAGC 2 cut(s) 112, 157
LweI GCATC 2 cut(s) 166, 352
MaeI CTAG 3 cut(s) 188, 288, 327
MaeIII GTNAC 2 cut(s) 283, 310
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 5 cut(s) 142, 188, 191, 197, 282
MfeI CAATTG 1 cut(s) 332
MluCI AATT 2 cut(s) 63, 332
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 3 cut(s) 83, 195, 214
MseI TTAA 1 cut(s) 138
MspI CCGG 1 cut(s) 6
MunI CAATTG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 122, 176, 256
NdeII GATC 1 cut(s) 381
NlaIII CATG 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 283, 310
PciSI GCTCTTC 1 cut(s) 265
PfeI GAWTC 4 cut(s) 44, 147, 193, 346
PkrI GCNGC 2 cut(s) 102, 172
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 101, 171
Sau3AI GATC 1 cut(s) 381
SchI GAGTC 1 cut(s) 127
SetI ASST 7 cut(s) 75, 88, 105, 127, 295, 328, 378
SfaNI GCATC 2 cut(s) 166, 352
SfcI CTRYAG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 104, 356
SmoI CTYRAG 2 cut(s) 104, 356
Sse9I AATT 2 cut(s) 63, 332
SsiI CCGC 1 cut(s) 35
SspMI CTAG 3 cut(s) 188, 288, 327
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 1 cut(s) 56
TasI AATT 2 cut(s) 63, 332
TfiI GAWTC 4 cut(s) 44, 147, 193, 346
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 2 cut(s) 283, 310
TseI GCWGC 2 cut(s) 100, 170
Tsp45I GTSAC 2 cut(s) 283, 310
TspDTI ATGAA 2 cut(s) 135, 191
XbaI TCTAGA 1 cut(s) 187
XspI CTAG 3 cut(s) 188, 288, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.