pycom02g02760

NHP2-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013069
Physical Location & Seq
Reverse (-)
1743059 .. 1744511
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02760.4

Sequence Viewer

Length: 387 bp
ATGACCGGAGAGGCAGTGAACCCGAAGGCGTACCCGTTGGCCGACGCGCAGCTGACGATCACCATACTCGACCTGGTTCAGCAAGCTGCTAACTACAAGCAGCTCAAAAAGGGCGCGAATGAAGCAACTAAGACCTTGAACAGGGGTATTTCGGAGTTTATAGTGATGGCGGCGGATACCGAGCCCCTGGAGATTCTTCTTCACCTTCCCCTGCTGGCTGAGGATAAGAATGTGCCCTATGTGTTTGTCCCTTCGAAGCAAGCACTTGGACGAGCATGCGGTGTCACAAGACCCGTCATTGCCGCCTCTGTGACAACAAACGAGGGAAGTCAATTGAAGTCACAAATACAACAACTCAAGGATGCCATTGAGAAGCTCCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03040 map03008 map03040
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

129

Amino Acids

13.84

Weight (kDa)

6.57

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12600 AT4G22380 AT5G20160
fragaria_vesca FvH4_1g03460
malus_domestica MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis pycom02g02760 pycom15g15610
rosa_chinensis RchiOBHm_Chr2g0088681
rosa_laevigata RLG00000015975
rosa_multiflora Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii Rroxscaffold_2G00152410
rosa_rugosa Rorug01G0485800
rosa_samantha Rh2AG041300
rosa_wichuraiana Rw2G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 47, 116
AciI CCGC 4 cut(s) 170, 173, 279, 303
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 2 cut(s) 139, 337
AjnI CCWGG 2 cut(s) 72, 186
AluBI AGCT 4 cut(s) 52, 86, 103, 376
AluI AGCT 4 cut(s) 52, 86, 103, 376
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 49, 86, 100
AspLEI GCGC 2 cut(s) 49, 116
AsuHPI GGTGA 2 cut(s) 52, 194
AsuII TTCGAA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 3 cut(s) 61, 73, 112
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 74, 188
BciVI GTATCC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 5 cut(s) 50, 87, 101, 171, 303
BlsI GCNGC 5 cut(s) 51, 88, 102, 172, 304
Bme1390I CCNGG 2 cut(s) 74, 188
BmrFI CCNGG 2 cut(s) 74, 188
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 74, 188
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 3 cut(s) 61, 73, 112
Bsh1236I CGCG 2 cut(s) 47, 116
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 186, 237
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 4 cut(s) 170, 173, 279, 303
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 2 cut(s) 47, 116
BspT104I TTCGAA 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 74, 188
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 4 cut(s) 84, 216, 261, 277
BstDEI CTNAG 2 cut(s) 129, 219
BstENI CCTNNNNNAGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 2 cut(s) 47, 116
BstHHI GCGC 2 cut(s) 49, 116
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 2 cut(s) 74, 188
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 72, 186
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 2 cut(s) 47, 116
BstV1I GCAGC 3 cut(s) 61, 73, 112
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 4 cut(s) 84, 216, 261, 277
CfoI GCGC 2 cut(s) 49, 116
CseI GACGC 1 cut(s) 53
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 276
CviJI RGCY 7 cut(s) 41, 52, 86, 103, 184, 218, 376
CviKI_1 RGCY 7 cut(s) 41, 52, 86, 103, 184, 218, 376
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 129, 219
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 72, 186
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 1 cut(s) 279
FaiI YATR 4 cut(s) 65, 161, 240, 277
FaqI GGGAC 1 cut(s) 233
FatI CATG 1 cut(s) 275
Fnu4HI GCNGC 5 cut(s) 50, 87, 101, 171, 303
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 5 cut(s) 50, 87, 101, 171, 303
GlaI GCGC 2 cut(s) 48, 115
GluI GCNGC 5 cut(s) 50, 87, 101, 171, 303
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 53
HhaI GCGC 2 cut(s) 49, 116
Hin1II CATG 1 cut(s) 279
Hin6I GCGC 2 cut(s) 47, 114
HinP1I GCGC 2 cut(s) 47, 114
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 52, 194
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 19, 215, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 129, 219
Hsp92II CATG 1 cut(s) 279
HspAI GCGC 2 cut(s) 47, 114
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 8 cut(s) 19, 59, 86, 127, 173, 200, 200, 224
Lsp1109I GCAGC 3 cut(s) 61, 73, 112
LweI GCATC 1 cut(s) 352
MabI ACCWGGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 283, 310, 339
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 2 cut(s) 188, 191
MfeI CAATTG 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 186, 237
MluCI AATT 1 cut(s) 332
MnlI CCTC 4 cut(s) 4, 214, 316, 316
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 74, 188
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 2 cut(s) 74, 188
MvnI CGCG 2 cut(s) 47, 116
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 57
NlaIII CATG 1 cut(s) 279
NmuCI GTSAC 3 cut(s) 283, 310, 339
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 254
PaeI GCATGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 5 cut(s) 51, 88, 102, 172, 304
Psp6I CCWGG 2 cut(s) 72, 186
PspGI CCWGG 2 cut(s) 72, 186
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SatI GCNGC 5 cut(s) 50, 87, 101, 171, 303
Sau3AI GATC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 74, 188
SduI GDGCHC 2 cut(s) 186, 237
SetI ASST 7 cut(s) 54, 75, 88, 105, 137, 207, 378
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SphI GCATGC 1 cut(s) 279
Sse9I AATT 1 cut(s) 332
SsiI CCGC 4 cut(s) 170, 173, 279, 303
StyD4I CCNGG 2 cut(s) 72, 186
TaqI TCGA 2 cut(s) 69, 254
TasI AATT 1 cut(s) 332
TauI GCSGC 2 cut(s) 173, 305
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 3 cut(s) 283, 310, 339
TseI GCWGC 3 cut(s) 49, 86, 100
Tsp45I GTSAC 3 cut(s) 283, 310, 339
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 139
XceI RCATGY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.