Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013069

Physical Location & Seq

Genomic Coordinates Forward (+)

450967 .. 452809

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACAGGAGAGGCAGTGAACGCAAAAGCGTACCCTTTGGCCGATGCGCAGCTGACGATCACAATACTCGACCTGGTTCAACAGGCAGCTAACTACAAGCAGCTTAAAAAGGGTGCCAATGAAGCGACTAAGACCCTGAACAGGGGTATTTCTGAGTTCGTAGTGATGGCGTGTGACACTGAGCCGATTGAGATTCTTCTTCACCTTCCCCTGTTGGCTGAAGATAAGAATGTTCCCTACGTTTTTGTCCCTTCGAAGCAAGCACTTGGCCGAGCCTGTGGTGTCACAAGACCTGTCATTGCGTGTTCTGTTACTTCAAATGAGGGAAGTCAATTGAAGTCGCAAATACAACAGCTCAAGGATGCCATTGAGAAACTCCTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005690 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030622 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071005 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03040 map03008 map03040

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

129

Amino Acids

13.85

Weight (kDa)

6.56

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12600 AT4G22380 AT5G20160
fragaria_vesca	FvH4_1g03460
malus_domestica	MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica	Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis	pycom02g02760 pycom15g15610
rosa_chinensis	RchiOBHm_Chr2g0088681
rosa_laevigata	RLG00000015975
rosa_multiflora	Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii	Rroxscaffold_2G00152410
rosa_rugosa	Rorug01G0485800
rosa_samantha	Rh2AG041300
rosa_wichuraiana	Rw2G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	113
AcoI	YGGCCR	2 cut(s)	39, 268
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	141, 142
AgsI	TTSAA	3 cut(s)	80, 318, 337
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	52, 89, 103, 355
AluI	AGCT	4 cut(s)	52, 89, 103, 355
AoxI	GGCC	2 cut(s)	39, 268
ApeKI	GCWGC	3 cut(s)	49, 86, 100
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	3 cut(s)	61, 98, 112
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	50, 87, 101
BlsI	GCNGC	3 cut(s)	51, 88, 102
Bme1390I	CCNGG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	34, 352
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	341
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 142
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	141, 142
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	144, 171
BseXI	GCAGC	3 cut(s)	61, 98, 112
BshFI	GGCC	2 cut(s)	41, 270
BshNI	GGYRCC	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	141, 142
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	41, 270
Bsp119I	TTCGAA	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	41, 270
BspCNI	CTCAG	2 cut(s)	145, 172
BspLI	GGNNCC	1 cut(s)	115
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	297
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	3 cut(s)	129, 153, 180
BstF5I	GGATG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 122
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	61, 98, 112
BsuRI	GGCC	2 cut(s)	41, 270
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 177
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	49
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	31
CviJI	RGCY	9 cut(s)	41, 52, 89, 103, 184, 218, 270, 275, 355
CviKI_1	RGCY	9 cut(s)	41, 52, 89, 103, 184, 218, 270, 275, 355
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	129, 153, 180
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	2 cut(s)	39, 268
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	72
FaqI	GGGAC	1 cut(s)	233
Fnu4HI	GCNGC	3 cut(s)	50, 87, 101
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	3 cut(s)	50, 87, 101
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	50, 87, 101
HaeIII	GGCC	2 cut(s)	41, 270
HhaI	GCGC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	215, 261
HpyCH4IV	ACGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 122
HpyF3I	CTNAG	3 cut(s)	129, 153, 180
HpySE526I	ACGT	1 cut(s)	240
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	57
LpnPI	CCDG	8 cut(s)	59, 68, 86, 127, 149, 224, 289, 306
Lsp1109I	GCAGC	3 cut(s)	61, 98, 112
LweI	GCATC	2 cut(s)	34, 352
MabI	ACCWGGT	1 cut(s)	72
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	173, 283, 310
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	3 cut(s)	188, 191, 233
MfeI	CAATTG	1 cut(s)	332
MluCI	AATT	1 cut(s)	332
MnlI	CCTC	2 cut(s)	4, 316
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	74
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	20, 122
NdeII	GATC	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	2 cut(s)	173, 283
NsbI	TGCGCA	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	51, 88, 102
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	50, 87, 101
Sau3AI	GATC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	8 cut(s)	54, 75, 91, 105, 207, 243, 295, 357
SexAI	ACCWGGT	1 cut(s)	72
SfaNI	GCATC	2 cut(s)	34, 352
SfuI	TTCGAA	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	69, 254
TasI	AATT	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	21, 184
TseFI	GTSAC	2 cut(s)	173, 283
TseI	GCWGC	3 cut(s)	49, 86, 100
Tsp45I	GTSAC	2 cut(s)	173, 283
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	21, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.