Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014020

Physical Location & Seq

Genomic Coordinates Forward (+)

7521257 .. 7522761

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAGCGAGTGCATCTCCAATGGCGAGCCAGCTAAGGAGCAGCTTCTCCTCCGCTTCTCTTTCTCAGCGTCTCGCCGTCCCGAAGGGCATCTCCGGTGCTCCTTTCGGTGTTTCTCCGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGTTTGGAAACTCCGGTGACATCAAGCCCATTGATCGCGTGGTACCTTTCCAACCTCCCTGGATACCGTACCGCCGTCAACCCTCTCCTCCGCGGTGTGGAAGTGGGCCTGGCCCATGGTTTCTTCTTAGTGGGCCCATTCGTCAAAGCTGGCCCATTAAGGAACACTGCTTACGCCGGGTCAGCCGGGTCTTTAGCCGCGGCTGGGCTGGTAGTCATCCTCAGCATGTGCCTCACCATCTACGGTATCTCTTCTTTCAAGGAAGGAGAGCCATCGATCGCACCGAGTTTGACTTTGACTGGGCGGAAGAAGCAGCCTGACCAGCTTCAAACGGCTGATGGATGGGCTAAGTTCACTGGAGGATTCTTCTTTGGAGGGATCTCTGGGGTGACTTGGGCTTACTTCCTTCTCTACGTTCTTGACCTTCCTTACTTCGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsaL

Protein Analysis

219

Amino Acids

23.05

Weight (kDa)

9.85

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaL	PF02605	61 - 212	7.6e-57	Photosystem I reaction centre subunit XI

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12800
fragaria_vesca	FvH4_6g00530
malus_domestica	MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica	Prupe.6G361000_v2.0.a1
pyrus_communis	pycom04g21530 pycom12g23840
rosa_chinensis	RchiOBHm_Chr3g0447921
rosa_laevigata	RLG00000025961
rosa_multiflora	Rmu_sc0005969.1_g000004
rosa_roxburghii	Rroxscaffold_6G00426110
rosa_rugosa	Rorug02G0607000
rosa_samantha	Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana	Rw3G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AccII	CGCG	3 cut(s)	254, 309, 416
AciI	CCGC	7 cut(s)	54, 288, 307, 309, 414, 416, 520
AclWI	GGATC	2 cut(s)	197, 602
AfaI	GTAC	2 cut(s)	260, 286
AfiI	CCNNNNNNNGG	4 cut(s)	197, 212, 313, 420
AgsI	TTSAA	3 cut(s)	188, 475, 545
AjnI	CCWGG	2 cut(s)	274, 324
AluBI	AGCT	5 cut(s)	34, 45, 152, 365, 541
AluI	AGCT	5 cut(s)	34, 45, 152, 365, 541
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	77, 136
AlwI	GGATC	2 cut(s)	197, 602
AoxI	GGCC	4 cut(s)	322, 327, 349, 367
ApaI	GGGCCC	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	5, 42, 529
Asp718I	GGTACC	1 cut(s)	258
AspS9I	GGNCC	5 cut(s)	322, 328, 349, 350, 368
AsuC2I	CCSGG	2 cut(s)	394, 403
AsuHPI	GGTGA	4 cut(s)	212, 244, 442, 616
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	17, 54, 541
BccI	CCATC	4 cut(s)	461, 496, 548, 552
BceAI	ACGGC	3 cut(s)	62, 275, 564
BciT130I	CCWGG	2 cut(s)	276, 326
BciVI	GTATCC	1 cut(s)	272
BcnI	CCSGG	2 cut(s)	394, 403
BcoDI	GTCTC	2 cut(s)	77, 136
BfuI	GTATCC	1 cut(s)	272
BisI	GCNGC	5 cut(s)	6, 43, 414, 417, 530
BlsI	GCNGC	5 cut(s)	7, 44, 415, 418, 531
Bme1390I	CCNGG	4 cut(s)	276, 326, 394, 403
BmgT120I	GGNCC	5 cut(s)	322, 328, 349, 350, 368
BmiI	GGNNCC	2 cut(s)	260, 351
BmrFI	CCNGG	4 cut(s)	276, 326, 394, 403
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	2 cut(s)	23, 99
BmuI	ACTGGG	1 cut(s)	525
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	2 cut(s)	35, 437
BpuMI	CCSGG	2 cut(s)	394, 403
Bsa29I	ATCGAT	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	274, 307, 331, 414
BsaWI	WCCGGW	2 cut(s)	95, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 212, 313, 420
Bse1I	ACTGG	2 cut(s)	520, 577
BseBI	CCWGG	2 cut(s)	276, 326
BseCI	ATCGAT	1 cut(s)	491
BseDI	CCNNGG	4 cut(s)	274, 307, 331, 414
BseGI	GGATG	2 cut(s)	432, 563
BseLI	CCNNNNNNNGG	4 cut(s)	197, 212, 313, 420
BseMII	CTCAG	2 cut(s)	80, 451
BseNI	ACTGG	2 cut(s)	520, 577
BseRI	GAGGAG	2 cut(s)	40, 293
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	17, 54, 541
BseYI	CCCAGC	1 cut(s)	419
Bsh1236I	CGCG	3 cut(s)	254, 309, 416
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	4 cut(s)	324, 329, 351, 369
BshNI	GGYRCC	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	491
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	4 cut(s)	96, 230, 393, 402
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	197, 212, 313, 420
BsmAI	GTCTC	2 cut(s)	77, 136
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	324, 329, 351, 369
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	103, 353
Bsp143I	GATC	4 cut(s)	202, 249, 492, 594
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	7 cut(s)	54, 288, 307, 309, 414, 416, 520
BspANI	GGCC	4 cut(s)	324, 329, 351, 369
BspCNI	CTCAG	2 cut(s)	79, 450
BspDI	ATCGAT	1 cut(s)	491
BspFNI	CGCG	3 cut(s)	254, 309, 416
BspLI	GGNNCC	2 cut(s)	260, 351
BspPI	GGATC	2 cut(s)	197, 602
BspT107I	GGYRCC	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	520, 577
BssECI	CCNNGG	4 cut(s)	274, 307, 331, 414
BssMI	GATC	4 cut(s)	202, 249, 492, 594
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	2 cut(s)	276, 326
Bst4CI	ACNGT	4 cut(s)	145, 200, 284, 461
Bst6I	CTCTTC	2 cut(s)	139, 472
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	28, 32, 367
BstDEI	CTNAG	5 cut(s)	35, 66, 343, 437, 564
BstDSI	CCRYGG	3 cut(s)	307, 331, 414
BstF5I	GGATG	2 cut(s)	432, 563
BstFNI	CGCG	3 cut(s)	254, 309, 416
BstKTI	GATC	4 cut(s)	205, 252, 495, 597
BstMAI	GTCTC	2 cut(s)	77, 136
BstMBI	GATC	4 cut(s)	202, 249, 492, 594
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 398, 526, 538
BstNI	CCWGG	2 cut(s)	276, 326
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	4 cut(s)	274, 324, 392, 401
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	3 cut(s)	254, 309, 416
BstV1I	GCAGC	3 cut(s)	17, 54, 541
BstX2I	RGATCY	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	594
Bsu15I	ATCGAT	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	4 cut(s)	324, 329, 351, 369
BsuTUI	ATCGAT	1 cut(s)	491
BtgI	CCRYGG	3 cut(s)	307, 331, 414
BtsCI	GGATG	2 cut(s)	432, 563
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	141, 381, 570
Cac8I	GCNNGC	3 cut(s)	28, 32, 367
Cfr13I	GGNCC	5 cut(s)	322, 328, 349, 350, 368
Cfr42I	CCGCGG	2 cut(s)	310, 417
ClaI	ATCGAT	1 cut(s)	491
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	259, 285
CviAII	CATG	2 cut(s)	332, 442
CviQI	GTAC	2 cut(s)	259, 285
DdeI	CTNAG	5 cut(s)	35, 66, 343, 437, 564
DpnI	GATC	4 cut(s)	204, 251, 494, 596
DpnII	GATC	4 cut(s)	202, 249, 492, 594
Eam1104I	CTCTTC	2 cut(s)	139, 472
EarI	CTCTTC	2 cut(s)	139, 472
EciI	GGCGGA	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	274, 324
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	2 cut(s)	335, 445
FaiI	YATR	2 cut(s)	333, 443
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	331, 441
Fnu4HI	GCNGC	5 cut(s)	6, 43, 414, 417, 530
FokI	GGATG	2 cut(s)	419, 570
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	5 cut(s)	6, 43, 414, 417, 530
GluI	GCNGC	5 cut(s)	6, 43, 414, 417, 530
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	4 cut(s)	324, 329, 351, 369
HapII	CCGG	4 cut(s)	96, 230, 393, 402
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	335, 445
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	129, 579
HpaII	CCGG	4 cut(s)	96, 230, 393, 402
HphI	GGTGA	4 cut(s)	212, 244, 442, 616
Hpy166II	GTNNAC	2 cut(s)	295, 570
Hpy188I	TCNGA	4 cut(s)	120, 149, 163, 215
Hpy188III	TCNNGA	2 cut(s)	82, 635
Hpy8I	GTNNAC	2 cut(s)	295, 570
HpyAV	CCTTC	5 cut(s)	79, 148, 473, 632, 650
HpyCH4III	ACNGT	4 cut(s)	145, 200, 284, 461
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 398, 526, 538
HpyF3I	CTNAG	5 cut(s)	35, 66, 343, 437, 564
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	2 cut(s)	335, 445
KpnI	GGTACC	1 cut(s)	262
KspI	CCGCGG	2 cut(s)	310, 417
Kzo9I	GATC	4 cut(s)	202, 249, 492, 594
LmnI	GCTCC	2 cut(s)	39, 106
Lsp1109I	GCAGC	3 cut(s)	17, 54, 541
LweI	GCATC	2 cut(s)	23, 99
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	232, 604
MalI	GATC	4 cut(s)	204, 251, 494, 596
MboI	GATC	4 cut(s)	202, 249, 492, 594
MboII	GAAGA	5 cut(s)	126, 331, 459, 535, 574
MflI	RGATCY	1 cut(s)	594
MhlI	GDGCHC	2 cut(s)	103, 353
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	3 cut(s)	143, 186, 291
MnlI	CCTC	8 cut(s)	61, 281, 309, 314, 446, 458, 569, 584
MseI	TTAA	2 cut(s)	156, 374
MspA1I	CMGCKG	2 cut(s)	309, 416
MspI	CCGG	4 cut(s)	96, 230, 393, 402
MspR9I	CCNGG	4 cut(s)	276, 326, 394, 403
MvaI	CCWGG	2 cut(s)	276, 326
MvnI	CGCG	3 cut(s)	254, 309, 416
MwoI	GCNNNNNNNGC	4 cut(s)	11, 398, 526, 538
NciI	CCSGG	2 cut(s)	394, 403
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	4 cut(s)	202, 249, 492, 594
NlaIII	CATG	2 cut(s)	335, 445
NlaIV	GGNNCC	2 cut(s)	260, 351
NmuCI	GTSAC	2 cut(s)	232, 604
NspI	RCATGY	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	579
PkrI	GCNGC	5 cut(s)	7, 44, 415, 418, 531
Ple19I	CGATCG	1 cut(s)	495
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	274, 324
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	2 cut(s)	274, 324
PspN4I	GGNNCC	2 cut(s)	260, 351
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	5 cut(s)	322, 328, 349, 350, 368
PsrI	GAACNNNNNNTAC	2 cut(s)	371, 403
PsuI	RGATCY	1 cut(s)	594
PvuI	CGATCG	1 cut(s)	495
RsaI	GTAC	2 cut(s)	260, 286
RsaNI	GTAC	2 cut(s)	259, 285
SacII	CCGCGG	2 cut(s)	310, 417
SaqAI	TTAA	2 cut(s)	156, 374
SatI	GCNGC	5 cut(s)	6, 43, 414, 417, 530
Sau3AI	GATC	4 cut(s)	202, 249, 492, 594
Sau96I	GGNCC	5 cut(s)	322, 328, 349, 350, 368
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	4 cut(s)	276, 326, 394, 403
SduI	GDGCHC	2 cut(s)	103, 353
SetI	ASST	9 cut(s)	36, 47, 154, 264, 273, 367, 543, 633, 642
SfaNI	GCATC	2 cut(s)	23, 99
Sfr303I	CCGCGG	2 cut(s)	310, 417
SgrBI	CCGCGG	2 cut(s)	310, 417
SsiI	CCGC	7 cut(s)	54, 288, 307, 309, 414, 416, 520
StyD4I	CCNGG	4 cut(s)	274, 324, 392, 401
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	145, 200, 284, 461
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	1 cut(s)	491
TauI	GCSGC	2 cut(s)	416, 419
TfiI	GAWTC	1 cut(s)	579
Tru1I	TTAA	2 cut(s)	156, 374
Tru9I	TTAA	2 cut(s)	156, 374
TscAI	CASTG	3 cut(s)	148, 388, 577
TseFI	GTSAC	2 cut(s)	232, 604
TseI	GCWGC	3 cut(s)	5, 42, 529
Tsp45I	GTSAC	2 cut(s)	232, 604
TspDTI	ATGAA	1 cut(s)	199
TspRI	CASTG	3 cut(s)	148, 388, 577
XceI	RCATGY	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.