Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0014020

Physical Location & Seq

Genomic Coordinates Forward (+)

7702 .. 8643

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggccagtgcttcaccaatggccagccagctcaagtccagcttcacctccccagtctctagagctttgcttgttcccaagggcctctcctcctctccgctcaggctcttgccttctaagagatcctcttccttcaccatcaaagccacccaaaccgacaagccattccaagtgattcagccaatcaatggtgaccccttcattggaagcttggagactccagtgacatccagccctttgattgcatggtacctctccaacctcccagcctacaggacagcagtgagcccacttttgaggggaattgaggtgggcctggcccatggattcctcttggtcggcccattcgtcaaggcaggcccattgaggaacactgaagtggctgggccagctggctccttggcagctgctggtcttgtggtcatcctcagcgtttgcttgaccatgtacggaattgcatccttcaaggagggagacccgtccacagctccatctttgaccttgaccggccgcaagaaggagccggaccagctccagaccgccgagggatgggccaaattcaccggagggttctttttcggagggatttcgggtgtcacctgggcttacttcctcctctatgtcataaaccttccttactacgtcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsaL

Protein Analysis

216

Amino Acids

22.86

Weight (kDa)

9.71

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12800
fragaria_vesca	FvH4_6g00530
malus_domestica	MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica	Prupe.6G361000_v2.0.a1
pyrus_communis	pycom04g21530 pycom12g23840
rosa_chinensis	RchiOBHm_Chr3g0447921
rosa_laevigata	RLG00000025961
rosa_multiflora	Rmu_sc0005969.1_g000004
rosa_roxburghii	Rroxscaffold_6G00426110
rosa_rugosa	Rorug02G0607000
rosa_samantha	Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana	Rw3G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	3 cut(s)	98, 511, 540
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	3 cut(s)	3, 21, 508
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	251, 449
AfiI	CCNNNNNNNGG	4 cut(s)	188, 203, 517, 549
AgsI	TTSAA	1 cut(s)	466
AjnI	CCWGG	2 cut(s)	315, 599
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	8 cut(s)	31, 42, 65, 210, 392, 407, 488, 532
AluI	AGCT	8 cut(s)	31, 42, 65, 210, 392, 407, 488, 532
Alw26I	GTCTC	3 cut(s)	61, 209, 468
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	404, 407
ApoI	RAATTY	1 cut(s)	557
Asp718I	GGTACC	1 cut(s)	249
AspS9I	GGNCC	8 cut(s)	82, 313, 319, 341, 359, 386, 526, 552
AsuHPI	GGTGA	6 cut(s)	6, 37, 127, 203, 553, 589
AvaII	GGWCC	1 cut(s)	526
BalI	TGGCCA	2 cut(s)	5, 23
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	290
BbvCI	CCTCAGC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	394, 416
BccI	CCATC	3 cut(s)	146, 499, 543
BciT130I	CCWGG	2 cut(s)	317, 601
BcoDI	GTCTC	3 cut(s)	61, 209, 468
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	271
BisI	GCNGC	3 cut(s)	405, 408, 511
BlsI	GCNGC	3 cut(s)	406, 409, 512
Bme1390I	CCNGG	2 cut(s)	317, 601
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	8 cut(s)	82, 313, 319, 341, 359, 386, 526, 552
BmiI	GGNNCC	3 cut(s)	251, 397, 522
BmrFI	CCNGG	2 cut(s)	317, 601
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	47
BpmI	CTGGAG	2 cut(s)	204, 518
Bpu10I	CCTNAGC	2 cut(s)	101, 428
BpuEI	CTTGAG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	5 cut(s)	78, 322, 399, 543, 600
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 203, 517, 549
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	3 cut(s)	6, 53, 221
BseBI	CCWGG	2 cut(s)	317, 601
BseDI	CCNNGG	5 cut(s)	78, 322, 399, 543, 600
BseGI	GGATG	4 cut(s)	227, 423, 458, 554
BseLI	CCNNNNNNNGG	4 cut(s)	188, 203, 517, 549
BseMII	CTCAG	2 cut(s)	115, 442
BseNI	ACTGG	3 cut(s)	6, 53, 221
BseRI	GAGGAG	3 cut(s)	79, 82, 605
BseX3I	CGGCCG	1 cut(s)	508
BseXI	GCAGC	2 cut(s)	394, 416
BseYI	CCCAGC	2 cut(s)	265, 383
Bsh1285I	CGRYCG	1 cut(s)	511
BshNI	GGYRCC	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	511
BsiSI	CCGG	3 cut(s)	507, 524, 564
BslI	CCNNNNNNNGG	4 cut(s)	188, 203, 517, 549
BsmAI	GTCTC	3 cut(s)	61, 209, 468
Bso31I	GGTCTC	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	3 cut(s)	98, 511, 540
BspCNI	CTCAG	2 cut(s)	114, 441
BspLI	GGNNCC	3 cut(s)	251, 397, 522
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	3 cut(s)	6, 53, 221
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	5 cut(s)	78, 322, 399, 543, 600
BssMI	GATC	1 cut(s)	122
BssT1I	CCWWGG	3 cut(s)	78, 322, 399
Bst2UI	CCWGG	2 cut(s)	317, 601
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	5 cut(s)	25, 29, 358, 390, 394
BstDEI	CTNAG	3 cut(s)	101, 117, 428
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	4 cut(s)	227, 423, 458, 554
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	3 cut(s)	61, 209, 468
BstMBI	GATC	1 cut(s)	122
BstMCI	CGRYCG	1 cut(s)	511
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 529
BstNI	CCWGG	2 cut(s)	317, 601
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	315, 599
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	394, 416
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BstZI	CGGCCG	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	4 cut(s)	227, 423, 458, 554
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	4 cut(s)	13, 228, 288, 372
Cac8I	GCNNGC	5 cut(s)	25, 29, 358, 390, 394
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	8 cut(s)	82, 313, 319, 341, 359, 386, 526, 552
Csp6I	GTAC	2 cut(s)	250, 448
CviAII	CATG	3 cut(s)	246, 323, 445
CviQI	GTAC	2 cut(s)	250, 448
DdeI	CTNAG	3 cut(s)	101, 117, 428
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	3 cut(s)	3, 21, 508
EagI	CGGCCG	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	508
Eco130I	CCWWGG	3 cut(s)	78, 322, 399
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	526
Eco52I	CGGCCG	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	315, 599
EcoT14I	CCWWGG	3 cut(s)	78, 322, 399
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	3 cut(s)	78, 322, 399
FaeI	CATG	3 cut(s)	249, 326, 448
FaiI	YATR	5 cut(s)	247, 324, 446, 621, 626
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	3 cut(s)	245, 322, 444
Fnu4HI	GCNGC	3 cut(s)	405, 408, 511
FokI	GGATG	4 cut(s)	214, 410, 445, 561
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	405, 408, 511
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	3 cut(s)	405, 408, 511
GsaI	CCCAGC	2 cut(s)	269, 387
GsuI	CTGGAG	2 cut(s)	204, 518
HapII	CCGG	3 cut(s)	507, 524, 564
Hin1II	CATG	3 cut(s)	249, 326, 448
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	3 cut(s)	175, 217, 327
HpaII	CCGG	3 cut(s)	507, 524, 564
HphI	GGTGA	6 cut(s)	6, 37, 127, 203, 553, 589
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	1 cut(s)	581
Hpy188III	TCNNGA	2 cut(s)	60, 535
Hpy8I	GTNNAC	1 cut(s)	483
HpyAV	CCTTC	6 cut(s)	123, 142, 208, 472, 511, 641
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	2 cut(s)	245, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 529
HpyF3I	CTNAG	3 cut(s)	101, 117, 428
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	3 cut(s)	249, 326, 448
KpnI	GGTACC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	4 cut(s)	401, 493, 520, 537
Lsp1109I	GCAGC	2 cut(s)	394, 416
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	3 cut(s)	191, 223, 595
MalI	GATC	1 cut(s)	124
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	122
MboII	GAAGA	1 cut(s)	120
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	2 cut(s)	5, 23
MluCI	AATT	3 cut(s)	303, 453, 557
MluNI	TGGCCA	2 cut(s)	5, 23
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	2 cut(s)	5, 23
MscI	TGGCCA	2 cut(s)	5, 23
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	2 cut(s)	5, 23
MspA1I	CMGCKG	2 cut(s)	392, 407
MspI	CCGG	3 cut(s)	507, 524, 564
MspR9I	CCNGG	2 cut(s)	317, 601
MvaI	CCWGG	2 cut(s)	317, 601
MwoI	GCNNNNNNNGC	2 cut(s)	389, 529
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	249, 326, 448
NlaIV	GGNNCC	3 cut(s)	251, 397, 522
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	3 cut(s)	191, 223, 595
OliI	CACNNNNGTG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	175, 327
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	406, 409, 512
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	315, 599
PspEI	GGTNACC	1 cut(s)	191
PspFI	CCCAGC	2 cut(s)	265, 383
PspGI	CCWGG	2 cut(s)	315, 599
PspN4I	GGNNCC	3 cut(s)	251, 397, 522
PspPI	GGNCC	8 cut(s)	82, 313, 319, 341, 359, 386, 526, 552
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	2 cut(s)	392, 407
RsaI	GTAC	2 cut(s)	251, 449
RsaNI	GTAC	2 cut(s)	250, 448
RseI	CAYNNNNRTG	1 cut(s)	377
SatI	GCNGC	3 cut(s)	405, 408, 511
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	8 cut(s)	82, 313, 319, 341, 359, 386, 526, 552
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	317, 601
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	303, 453, 557
SsiI	CCGC	3 cut(s)	98, 511, 540
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	315, 599
StyI	CCWWGG	3 cut(s)	78, 322, 399
TaiI	ACGT	1 cut(s)	645
TasI	AATT	3 cut(s)	303, 453, 557
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	2 cut(s)	175, 327
TscAI	CASTG	4 cut(s)	13, 228, 288, 379
TseFI	GTSAC	3 cut(s)	191, 223, 595
TseI	GCWGC	2 cut(s)	404, 407
Tsp45I	GTSAC	3 cut(s)	191, 223, 595
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	4 cut(s)	13, 228, 288, 379
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	59
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.