Rorug02G0607000

Photosystem I reaction center subunit XI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014020
Physical Location & Seq
Forward (+)
72443070 .. 72449054
5985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0607000.1

Sequence Viewer

Length: 3585 bp
ATGTTGCACCCCCTAACTCACCTTCCCGCCTCCTCTCTCCCGCCAAAAACCCTAACCCACCACCAATCCTTCTCTCCCTTCTTCTCCTTCCCCCAAACCCCCAAACCCTCCAAATTCACTATCCGGAGCTCCGCCGCCGACCCCCAGACCCTCGCCCCCAACTCCGCCATCCAACGAATCGCCGAGAAGCTCCGCAGCCTCGGGTTCGCCGAAGACGACACCAAAAAGCCGGACTCCAGACCCGACCCGAACTCCGCCGGAGAAATCTTCGTCCCTCTGCCGGAGACTCTGCCCAAGTACCGCGTCGGGCACACCATCGATGCCAGCTGGAGCACGCCGGAGAATCCGGTGCCGGAGCCGGGGACCGGGAGGGCGATTTCGAGGTTTCATGAGATGAGGAGAGAGCTGAGGAGGCAGAAGCAGGTTGAGGAGTTGGAGAAGAAAGAAGAGAGGGTTGCTACATTGGCCGAGATGAGCTTGTCTGGGGCTGAGCTGAGGCGGTTGAGGACGGTTGGGATTGAGCTGAACAAGAAGATTAAGGTTGGGAAGGCTGGGATTACTGAGGGGATTGTGAATGGGATTCATGAGAATTGGCGGAGATCGGAGGTTGTGAAGATTGTGTGTGAGGATTTGTGTAGGTTGAACATGAAGAGGACTCATGATTTGTTGGAGAGAAAAACTGGAGGGATGGTTGTTTGGAGGTCAGGAGCGAAGATAGTTTTGTATAGGGGGGTGAACTATAAGTATCCTTACTTTTTGCGGGGTAAAAATCATGAGGATTTGACGAGTGATGGTTCTGGTGATGTGCTACCGGATGCACACGTCAGTGATGGAGGAACAGATAAAGCAAACTCTGCTACAGGATCAAGTCCAACTGACGAAAGAGCTCAGCCAGCGTTAATACAAGGGGTTGGTTTGGCAAATAGGTTTCGGTTTCAACTTCCAGGTGAGGCAGAACTTGCTGAAGAAGCTGACCGCTTGTTAGAGGGACTTGGGCCGCGGTTTACTGATTGGTGGGGATATGAACCTCTCCCTGTTGACGGGGACCTTCTACCAGCTATTGTGCCTGGATACAGGAGACCTTTCCGCCTTCTTCCATATGGCTTGCAGCCTAAGCTAACAGATGATGAAATGACCACAATTAGGAGACTTGCCCGACCCTTGCCATGTCATTTTGCATTGGGAAGAAATAGAAAGCTTCAAGGGTTGGCTGCTTCTATTGTCAAACTCTGGGAAAAATGTGAGATTGCCAAAGTAGCTGTTAAAAGAGGGGTTCAGAACACTAATAGCGAGCTGATGGCTGAAGAGTTGAAGAGGCTGACTGGAGGAACTCTGATTGCTCGGGACAGGGAATTTATTGTTTTATACAGGGGAAAGGATTTTCTGCCGCCTGCAGTTTCCTCTGCCATAGAAGAGCGTAGGAAGTCTGTAATATATGCAGATAATCGGAGCAGGCAGTTGAGCATTTCTGCTACAACGGCACAGGACCATAAATCCAGGACTGACCTGGAAAATAAAAATGATCTGATTCTGACCAATGGTCTTCCATCTGAAAAAAGAAAGCTAAAGTCTACTGAGGCAGCTGCCAGTAGAGCCAGCATTAAATTGTCCATGGCTTTAGAAAAGAGAGAAAAGGCAGAGAAGCTTCTAGTGGAGCTGGAGAAAGCAGAGAGTCCCCAGCAACCTGAAATAGATAAAGAAGGTATAACTGAAGAGGAAAGATATATGCTAAGGAAGGTTGGCTTGAAAATGAAGCCTTTCCTACTAATGGGTAGACGAGGAGTATTTGCTGGGACAATTGAAAACATGCATCTCCATTGGAAATATAGGGAGCTCATTAAGATAATATGTAATGAGAAAAGCATTGAATCTGCTCAGCAAGTAGCACAAACTTTAGAGTCAGAAAGTGGTGGGATTCTTGTGGCAGTGGAGAGAGTAAGTAAGGGTTATGCAATCATTGTGTATCGTGGAAAAAATTATATCCGGCCTGCTAATTTGAGACCTCAGACACTTCTGACTAAACGAGAAGCACTGAAGCGTTCTATTGAGGCACAGCGTCGTGAGTCCTTGAAACTTCATGTTTTAAAGCTTAACAAGAACATAGATGAATTGGAGCAATTGGTGGTTAAAGACAAGGGCGCAAACAATATGCACTCTGTCAATGAATCAAAGGAATTGGTCAGGGAGGAGGTGAACAATGTTGAATCAGAAGAACATTTGATATCAGATACTGAACTTAACTATGGTGCTCATTCGGTTCAACCTGATTTGCATGAAGAGATTGCCAAGGCTAGAGACAAACAAGAATCTCTTGTGACAAAGATGGATGTGAATGATGGAATTGGTGCTCTCATGAATGCCTACTCAGCCACACAACAGGGTGAGGGGTACGGTCTCTCTTCGAGCTGTGATGAGGAGGAGACTGGTAAAGTGGAACCAGGGTCTTCAAATGAATCAATTACAAGTGAATCCCCGGCAAATTTTTTCAATGATAGAAAGGGTCAAGTTGGAGACTTAGTAAAGGCTAGAGACAAACAAGAACCTCATGTCATAAATGCGGATATTGATGGTGGAATGAGTCCTTTCATGAACAGGCAGTTAGCCACACAACAAGATAAGGAGATTACTTTCTCTTCGACATGTGATGAGGATGGGTCTGGTAAAGTTGAACCAGTATCTCCAAATGAATCCGTTACAAATGAAACCCATGCAGATTTGTTTGATGATATAAATGAAGAAGTTGGAGCTTTCATTGAGGCTAGAGCCAACCAAGATTTGCAAGTGACTCAAATGGATTTAAATGTTGGAATGGGTGCTGTAATGAACAGCCAATTAGCCACTCAACAGGATAAGGAGATTTTCTCTTCAATGTGTGATGAGAATGAGACTGGTAGAGTTGATCCAGGATCTTCAGTTACAATTGAAACCCATCCAACGTTCTTTAAGGATGGAGATAGAGAAGTTGAAGCTTTTGCTTCTACATATTTCCCTGAAGGTGTTATGTCAAGAGGTCTGAGCAGTTCTGCAATTGTTGACAATCAGCATAATTGTTTTGATAATGAGGCCCGGGAGTCAATCGGTAGATCTGACAATAGTAAGTCAAAATTGCCAGTGCCAATAATGGGAAGAAAGATTTTGAATGACATGCCCTCGAGACCTGTGCATTTGTCCAACAGTGAGAGGCTTCTTCTGCGAAAGCAAGCCCTCAAGATGAAAAAACGCCCTGTCCTTGCCGTTGGTAGGAACAATATTGTAACTGGTGTTGCGAAAGCAATCAAGGTGCACTTTGAGAGGCATCCTCTTGCCATAGTAAATGTCAAAGGCAGAGCAAAAGGAACTTCAGTCAGGGAAATTGTTTTTAAACTGGAGCAAGCAACAGGTGCGGTTTTAGTCTCCCAGGAGCCAAGCAAAGTTATACTTTACAGGGGTTGGGGTGCAGGAGATAGTCCTGGAAATAATGATAAGAAGAACACAAGTGGGAAAAAGGCTGCTCCTGTGTCTCCTGAACTCTTGGCAGCAATAAGACTTGAGTGTGGTTTACAGAATCACGAAAAGGAAGATGCAACCGTGGAGGTTGGATTCTAA

Protein Analysis

1194

Amino Acids

132.75

Weight (kDa)

7.17

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 160 - 243 1.8e-22 CRS1 / YhbY (CRM) domain
CRS1_YhbY PF01985 373 - 457 1.4e-16 CRS1 / YhbY (CRM) domain
CRS1_YhbY PF01985 569 - 656 6e-19 CRS1 / YhbY (CRM) domain
CRS1_YhbY PF01985 1056 - 1142 6e-15 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12800
fragaria_vesca FvH4_6g00530
malus_domestica MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica Prupe.6G361000_v2.0.a1
pyrus_communis pycom04g21530 pycom12g23840
rosa_chinensis RchiOBHm_Chr3g0447921
rosa_laevigata RLG00000025961
rosa_multiflora Rmu_sc0005969.1_g000004
rosa_roxburghii Rroxscaffold_6G00426110
rosa_rugosa Rorug02G0607000
rosa_samantha Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana Rw3G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 2 cut(s) 1571, 1774
AccII CGCG 2 cut(s) 303, 1000
AccIII TCCGGA 1 cut(s) 123
AclI AACGTT 1 cut(s) 2936
AclWI GGATC 3 cut(s) 871, 2894, 2914
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 3 cut(s) 113, 1352, 2479
AcuI CTGAAG 7 cut(s) 984, 1323, 1731, 2054, 2895, 3012, 3324
AfaI GTAC 2 cut(s) 299, 2390
AfiI CCNNNNNNNGG 8 cut(s) 280, 359, 365, 1040, 1143, 1768, 3122, 3240
AflIII ACRYGT 2 cut(s) 820, 2639
AhdI GACNNNNNGTC 1 cut(s) 1539
AjiI CACGTC 1 cut(s) 823
AjnI CCWGG 8 cut(s) 943, 1066, 1496, 1506, 2437, 2902, 3396, 3448
AleI CACNNNNGTG 1 cut(s) 825
Alw21I GWGCWC 7 cut(s) 131, 335, 889, 1836, 2251, 2350, 3285
Alw44I GTGCAC 1 cut(s) 3281
AlwI GGATC 3 cut(s) 871, 2894, 2914
AlwNI CAGNNNCTG 1 cut(s) 2231
Ama87I CYCGRG 4 cut(s) 200, 1341, 3066, 3151
Aor13HI TCCGGA 1 cut(s) 123
AoxI GGCC 4 cut(s) 465, 995, 1985, 3063
ApaLI GTGCAC 1 cut(s) 3281
ApeKI GCWGC 7 cut(s) 195, 1108, 1211, 1580, 1583, 3488, 3515
ApoI RAATTY 3 cut(s) 113, 1352, 2479
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
Asp700I GAANNNNTTC 1 cut(s) 1757
AspLEI GCGC 1 cut(s) 2141
AspS9I GGNCC 5 cut(s) 363, 995, 1045, 1486, 3064
AsuC2I CCSGG 5 cut(s) 360, 367, 2474, 3067, 3068
AsuHPI GGTGA 6 cut(s) 11, 745, 812, 959, 2203, 2393
AvaI CYCGRG 4 cut(s) 200, 1341, 3066, 3151
AvaII GGWCC 3 cut(s) 363, 1045, 1486
BaeGI GKGCMC 2 cut(s) 312, 3285
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 3 cut(s) 131, 889, 1836
BbsI GAAGAC 3 cut(s) 219, 1535, 2436
Bbv12I GWGCWC 7 cut(s) 131, 335, 889, 1836, 2251, 2350, 3285
BbvCI CCTCAGC 2 cut(s) 407, 494
BbvI GCAGC 7 cut(s) 207, 1120, 1198, 1570, 1592, 3475, 3527
BceAI ACGGC 2 cut(s) 1494, 3218
BcgI CGANNNNNNTGC 2 cut(s) 3142, 3176
BciT130I CCWGG 8 cut(s) 945, 1068, 1498, 1508, 2439, 2904, 3398, 3450
BciVI GTATCC 2 cut(s) 756, 1064
BcnI CCSGG 5 cut(s) 360, 367, 2474, 3067, 3068
BfaI CTAG 4 cut(s) 1649, 2292, 2526, 2760
BfmI CTRYAG 2 cut(s) 858, 1392
BfuAI ACCTGC 1 cut(s) 412
BfuI GTATCC 2 cut(s) 756, 1064
BglII AGATCT 1 cut(s) 3083
BlpI GCTNAGC 3 cut(s) 489, 888, 1875
Bme18I GGWCC 3 cut(s) 363, 1045, 1486
BmeRI GACNNNNNGTC 1 cut(s) 1539
BmeT110I CYCGRG 4 cut(s) 200, 1341, 3066, 3151
BmgBI CACGTC 1 cut(s) 823
BmgT120I GGNCC 5 cut(s) 363, 995, 1045, 1486, 3064
BmiI GGNNCC 6 cut(s) 351, 357, 364, 1046, 2436, 3402
BmsI GCATC 5 cut(s) 310, 805, 1819, 3304, 3550
BpiI GAAGAC 3 cut(s) 219, 1535, 2436
BplI GAGNNNNNCTC 4 cut(s) 2846, 2878, 3283, 3315
BpmI CTGGAG 6 cut(s) 220, 349, 702, 1344, 1679, 3386
Bpu10I CCTNAGC 4 cut(s) 407, 494, 1113, 1730
Bpu1102I GCTNAGC 3 cut(s) 489, 888, 1875
BpuEI CTTGAG 2 cut(s) 3191, 3548
BpuMI CCSGG 5 cut(s) 360, 367, 2474, 3067, 3068
Bsa29I ATCGAT 1 cut(s) 318
BsaI GGTCTC 4 cut(s) 1072, 1993, 2399, 3148
BsaWI WCCGGW 3 cut(s) 123, 346, 811
BsaXI ACNNNNNCTCC 6 cut(s) 236, 266, 675, 705, 2502, 2532
Bsc4I CCNNNNNNNGG 8 cut(s) 280, 359, 365, 1040, 1143, 1768, 3122, 3240
Bse1I ACTGG 9 cut(s) 685, 1327, 1587, 2428, 2672, 2893, 3110, 3262, 3369
BseAI TCCGGA 1 cut(s) 123
BseBI CCWGG 8 cut(s) 945, 1068, 1498, 1508, 2439, 2904, 3398, 3450
BseCI ATCGAT 1 cut(s) 318
BseGI GGATG 8 cut(s) 168, 693, 820, 2332, 2656, 2929, 2953, 3295
BseLI CCNNNNNNNGG 8 cut(s) 280, 359, 365, 1040, 1143, 1768, 3122, 3240
BseNI ACTGG 9 cut(s) 685, 1327, 1587, 2428, 2672, 2893, 3110, 3262, 3369
BseRI GAGGAG 8 cut(s) 22, 412, 424, 443, 1794, 2201, 2429, 2432
BseSI GKGCMC 2 cut(s) 312, 3285
BseXI GCAGC 7 cut(s) 207, 1120, 1198, 1570, 1592, 3475, 3527
BseYI CCCAGC 3 cut(s) 551, 1677, 1790
BsgI GTGCAG 1 cut(s) 3456
Bsh1236I CGCG 2 cut(s) 303, 1000
BshFI GGCC 4 cut(s) 467, 997, 1987, 3065
BshNI GGYRCC 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 7 cut(s) 131, 335, 889, 1836, 2251, 2350, 3285
BsiHKCI CYCGRG 4 cut(s) 200, 1341, 3066, 3151
BslFI GGGAC 7 cut(s) 257, 376, 1002, 1058, 1358, 1659, 1807
BslI CCNNNNNNNGG 8 cut(s) 280, 359, 365, 1040, 1143, 1768, 3122, 3240
BsmFI GGGAC 7 cut(s) 257, 376, 1002, 1058, 1358, 1659, 1807
BsmI GAATGC 1 cut(s) 2362
BsnI GGCC 4 cut(s) 467, 997, 1987, 3065
Bso31I GGTCTC 4 cut(s) 1072, 1993, 2399, 3148
BsoBI CYCGRG 4 cut(s) 200, 1341, 3066, 3151
Bsp1286I GDGCHC 8 cut(s) 131, 312, 335, 889, 1836, 2251, 2350, 3285
Bsp13I TCCGGA 1 cut(s) 123
Bsp143I GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
Bsp1720I GCTNAGC 3 cut(s) 489, 888, 1875
Bsp19I CCATGG 1 cut(s) 1611
BspANI GGCC 4 cut(s) 467, 997, 1987, 3065
BspDI ATCGAT 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 123
BspFNI CGCG 2 cut(s) 303, 1000
BspHI TCATGA 6 cut(s) 388, 583, 658, 772, 2352, 2586
BspLI GGNNCC 6 cut(s) 351, 357, 364, 1046, 2436, 3402
BspMAI CTGCAG 1 cut(s) 1396
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 3 cut(s) 871, 2894, 2914
BspQI GCTCTTC 1 cut(s) 1407
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 4 cut(s) 1072, 1993, 2399, 3148
BsrI ACTGG 9 cut(s) 685, 1327, 1587, 2428, 2672, 2893, 3110, 3262, 3369
BssMI GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
BssT1I CCWWGG 2 cut(s) 1611, 2286
Bst2UI CCWGG 8 cut(s) 945, 1068, 1498, 1508, 2439, 2904, 3398, 3450
Bst4CI ACNGT 4 cut(s) 511, 2393, 3176, 3568
BstAPI GCANNNNNTGC 3 cut(s) 854, 959, 3380
BstDSI CCRYGG 3 cut(s) 998, 1611, 3567
BstF5I GGATG 8 cut(s) 168, 693, 820, 2332, 2656, 2929, 2953, 3295
BstFNI CGCG 2 cut(s) 303, 1000
BstHHI GCGC 1 cut(s) 2141
BstKTI GATC 6 cut(s) 602, 866, 1525, 2902, 2909, 3086
BstMBI GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
BstNI CCWGG 8 cut(s) 945, 1068, 1498, 1508, 2439, 2904, 3398, 3450
BstNSI RCATGY 3 cut(s) 1810, 2643, 3148
BstSFI CTRYAG 2 cut(s) 858, 1392
BstSLI GKGCMC 2 cut(s) 312, 3285
BstUI CGCG 2 cut(s) 303, 1000
BstV1I GCAGC 7 cut(s) 207, 1120, 1198, 1570, 1592, 3475, 3527
BstV2I GAAGAC 3 cut(s) 219, 1535, 2436
BstX2I RGATCY 2 cut(s) 2906, 3083
BstYI RGATCY 2 cut(s) 2906, 3083
Bsu15I ATCGAT 1 cut(s) 318
BsuI GTATCC 2 cut(s) 756, 1064
BsuRI GGCC 4 cut(s) 467, 997, 1987, 3065
BsuTUI ATCGAT 1 cut(s) 318
BtgI CCRYGG 3 cut(s) 998, 1611, 3567
BtrI CACGTC 1 cut(s) 823
BtsCI GGATG 8 cut(s) 168, 693, 820, 2332, 2656, 2929, 2953, 3295
BtsI GCAGTG 1 cut(s) 1932
BtsIMutI CAGTG 5 cut(s) 832, 1932, 2030, 3117, 3181
BveI ACCTGC 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 2231
CciI TCATGA 6 cut(s) 388, 583, 658, 772, 2352, 2586
CfoI GCGC 1 cut(s) 2141
Cfr13I GGNCC 5 cut(s) 363, 995, 1045, 1486, 3064
Cfr42I CCGCGG 1 cut(s) 1001
Cfr9I CCCGGG 1 cut(s) 3066
ClaI ATCGAT 1 cut(s) 318
CseI GACGC 2 cut(s) 292, 2045
Csp6I GTAC 2 cut(s) 298, 2389
CviQI GTAC 2 cut(s) 298, 2389
DpnI GATC 6 cut(s) 601, 865, 1524, 2901, 2908, 3085
DpnII GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
DraI TTTAAA 3 cut(s) 2085, 2799, 3361
DriI GACNNNNNGTC 1 cut(s) 1539
EaeI YGGCCR 1 cut(s) 465
Eam1105I GACNNNNNGTC 1 cut(s) 1539
EciI GGCGGA 5 cut(s) 121, 154, 244, 610, 1076
Ecl136II GAGCTC 3 cut(s) 129, 887, 1834
Eco130I CCWWGG 2 cut(s) 1611, 2286
Eco24I GRGCYC 3 cut(s) 131, 889, 1836
Eco31I GGTCTC 4 cut(s) 1072, 1993, 2399, 3148
Eco32I GATATC 1 cut(s) 2223
Eco47I GGWCC 3 cut(s) 363, 1045, 1486
Eco53kI GAGCTC 3 cut(s) 129, 887, 1834
Eco57I CTGAAG 7 cut(s) 984, 1323, 1731, 2054, 2895, 3012, 3324
Eco88I CYCGRG 4 cut(s) 200, 1341, 3066, 3151
EcoICRI GAGCTC 3 cut(s) 129, 887, 1834
EcoO109I RGGNCCY 1 cut(s) 1045
EcoRII CCWGG 8 cut(s) 943, 1066, 1496, 1506, 2437, 2902, 3396, 3448
EcoRV GATATC 1 cut(s) 2223
EcoT14I CCWWGG 2 cut(s) 1611, 2286
EcoT22I ATGCAT 1 cut(s) 1812
EcoT38I GRGCYC 3 cut(s) 131, 889, 1836
ErhI CCWWGG 2 cut(s) 1611, 2286
FalI AAGNNNNNCTT 8 cut(s) 1727, 1759, 2295, 2327, 3269, 3301, 3402, 3434
FaqI GGGAC 7 cut(s) 257, 376, 1002, 1058, 1358, 1659, 1807
FauI CCCGC 3 cut(s) 34, 48, 753
FauNDI CATATG 1 cut(s) 1099
FblI GTMKAC 2 cut(s) 1571, 1774
FokI GGATG 8 cut(s) 155, 700, 827, 2339, 2663, 2916, 2960, 3282
FriOI GRGCYC 3 cut(s) 131, 889, 1836
FspBI CTAG 4 cut(s) 1649, 2292, 2526, 2760
GlaI GCGC 1 cut(s) 2140
GsaI CCCAGC 3 cut(s) 555, 1681, 1794
GsuI CTGGAG 6 cut(s) 220, 349, 702, 1344, 1679, 3386
HaeIII GGCC 4 cut(s) 467, 997, 1987, 3065
HgaI GACGC 2 cut(s) 292, 2045
HhaI GCGC 1 cut(s) 2141
Hin6I GCGC 1 cut(s) 2139
HinP1I GCGC 1 cut(s) 2139
HincII GTYRAC 2 cut(s) 1039, 3034
HindII GTYRAC 2 cut(s) 1039, 3034
HindIII AAGCTT 4 cut(s) 1196, 1643, 2087, 2967
HphI GGTGA 6 cut(s) 11, 745, 812, 959, 2203, 2393
Hpy166II GTNNAC 9 cut(s) 736, 1005, 1039, 1572, 1775, 2194, 3034, 3283, 3539
Hpy8I GTNNAC 9 cut(s) 736, 1005, 1039, 1572, 1775, 2194, 3034, 3283, 3539
Hpy99I CGWCG 2 cut(s) 308, 2061
HpyCH4III ACNGT 4 cut(s) 511, 2393, 3176, 3568
HpyCH4IV ACGT 2 cut(s) 822, 2936
HpySE526I ACGT 2 cut(s) 822, 2936
HspAI GCGC 1 cut(s) 2139
Kpn2I TCCGGA 1 cut(s) 123
KspI CCGCGG 1 cut(s) 1001
Kzo9I GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
LguI GCTCTTC 1 cut(s) 1407
Lsp1109I GCAGC 7 cut(s) 207, 1120, 1198, 1570, 1592, 3475, 3527
LweI GCATC 5 cut(s) 310, 805, 1819, 3304, 3550
MaeI CTAG 4 cut(s) 1649, 2292, 2526, 2760
MaeII ACGT 2 cut(s) 822, 2936
MaeIII GTNAC 5 cut(s) 2314, 2692, 2782, 2914, 3253
MalI GATC 6 cut(s) 601, 865, 1524, 2901, 2908, 3085
MboI GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
MfeI CAATTG 4 cut(s) 1797, 2117, 2919, 3027
MflI RGATCY 2 cut(s) 2906, 3083
MhlI GDGCHC 8 cut(s) 131, 312, 335, 889, 1836, 2251, 2350, 3285
MlyI GAGTC 9 cut(s) 227, 280, 649, 1681, 1907, 2072, 2587, 2779, 3080
Mph1103I ATGCAT 1 cut(s) 1812
MroI TCCGGA 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 1757
MslI CAYNNNNRTG 1 cut(s) 825
MspA1I CMGCKG 3 cut(s) 327, 1000, 1583
MunI CAATTG 4 cut(s) 1797, 2117, 2919, 3027
Mva1269I GAATGC 1 cut(s) 2362
MvaI CCWGG 8 cut(s) 945, 1068, 1498, 1508, 2439, 2904, 3398, 3450
MvnI CGCG 2 cut(s) 303, 1000
NciI CCSGG 5 cut(s) 360, 367, 2474, 3067, 3068
NcoI CCATGG 1 cut(s) 1611
NdeI CATATG 1 cut(s) 1099
NdeII GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
NlaIV GGNNCC 6 cut(s) 351, 357, 364, 1046, 2436, 3402
NmeAIII GCCGAG 2 cut(s) 208, 493
NmuCI GTSAC 2 cut(s) 2314, 2782
NsiI ATGCAT 1 cut(s) 1812
NspI RCATGY 3 cut(s) 1810, 2643, 3148
OliI CACNNNNGTG 1 cut(s) 825
PaeR7I CTCGAG 1 cut(s) 3151
PagI TCATGA 6 cut(s) 388, 583, 658, 772, 2352, 2586
PciI ACATGT 1 cut(s) 2639
PciSI GCTCTTC 1 cut(s) 1407
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 213
PctI GAATGC 1 cut(s) 2362
PdmI GAANNNNTTC 1 cut(s) 1757
PfoI TCCNGGA 3 cut(s) 1496, 2902, 3448
PleI GAGTC 9 cut(s) 227, 280, 649, 1680, 1906, 2071, 2586, 2779, 3079
PpsI GAGTC 9 cut(s) 227, 280, 649, 1680, 1906, 2071, 2586, 2779, 3079
PpuMI RGGWCCY 1 cut(s) 1045
PscI ACATGT 1 cut(s) 2639
Psp124BI GAGCTC 3 cut(s) 131, 889, 1836
Psp1406I AACGTT 1 cut(s) 2936
Psp5II RGGWCCY 1 cut(s) 1045
Psp6I CCWGG 8 cut(s) 943, 1066, 1496, 1506, 2437, 2902, 3396, 3448
PspFI CCCAGC 3 cut(s) 551, 1677, 1790
PspGI CCWGG 8 cut(s) 943, 1066, 1496, 1506, 2437, 2902, 3396, 3448
PspN4I GGNNCC 6 cut(s) 351, 357, 364, 1046, 2436, 3402
PspPI GGNCC 5 cut(s) 363, 995, 1045, 1486, 3064
PspPPI RGGWCCY 1 cut(s) 1045
PstI CTGCAG 1 cut(s) 1396
PstNI CAGNNNCTG 1 cut(s) 2231
PsuI RGATCY 2 cut(s) 2906, 3083
PvuII CAGCTG 2 cut(s) 327, 1583
RsaI GTAC 2 cut(s) 299, 2390
RsaNI GTAC 2 cut(s) 298, 2389
RseI CAYNNNNRTG 1 cut(s) 825
SacI GAGCTC 3 cut(s) 131, 889, 1836
SacII CCGCGG 1 cut(s) 1001
SapI GCTCTTC 1 cut(s) 1407
Sau3AI GATC 6 cut(s) 599, 863, 1522, 2899, 2906, 3083
Sau96I GGNCC 5 cut(s) 363, 995, 1045, 1486, 3064
SchI GAGTC 9 cut(s) 227, 280, 649, 1681, 1907, 2072, 2587, 2779, 3080
SduI GDGCHC 8 cut(s) 131, 312, 335, 889, 1836, 2251, 2350, 3285
SfaNI GCATC 5 cut(s) 310, 805, 1819, 3304, 3550
SfcI CTRYAG 2 cut(s) 858, 1392
Sfr274I CTCGAG 1 cut(s) 3151
Sfr303I CCGCGG 1 cut(s) 1001
SgrBI CCGCGG 1 cut(s) 1001
SinI GGWCC 3 cut(s) 363, 1045, 1486
SlaI CTCGAG 1 cut(s) 3151
SmaI CCCGGG 1 cut(s) 3068
SmiI ATTTAAAT 1 cut(s) 2799
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 3 cut(s) 3151, 3206, 3527
SmoI CTYRAG 3 cut(s) 3151, 3206, 3527
SspI AATATT 1 cut(s) 3250
SspMI CTAG 4 cut(s) 1649, 2292, 2526, 2760
SstI GAGCTC 3 cut(s) 131, 889, 1836
StyI CCWWGG 2 cut(s) 1611, 2286
SwaI ATTTAAAT 1 cut(s) 2799
TaaI ACNGT 4 cut(s) 511, 2393, 3176, 3568
TaiI ACGT 2 cut(s) 825, 2939
TaqI TCGA 5 cut(s) 318, 380, 2402, 2636, 3152
TauI GCSGC 3 cut(s) 137, 1000, 1390
TscAI CASTG 5 cut(s) 832, 1932, 2037, 3117, 3181
TseFI GTSAC 2 cut(s) 2314, 2782
TseI GCWGC 7 cut(s) 195, 1108, 1211, 1580, 1583, 3488, 3515
Tsp45I GTSAC 2 cut(s) 2314, 2782
TspGWI ACGGA 1 cut(s) 2680
TspMI CCCGGG 1 cut(s) 3066
TspRI CASTG 5 cut(s) 832, 1932, 2037, 3117, 3181
VneI GTGCAC 1 cut(s) 3281
VpaK11BI GGWCC 3 cut(s) 363, 1045, 1486
XapI RAATTY 3 cut(s) 113, 1352, 2479
XceI RCATGY 3 cut(s) 1810, 2643, 3148
XcmI CCANNNNNNNNNTGG 1 cut(s) 1504
XhoI CTCGAG 1 cut(s) 3151
XmaI CCCGGG 1 cut(s) 3066
XmiI GTMKAC 2 cut(s) 1571, 1774
XmnI GAANNNNTTC 1 cut(s) 1757
XspI CTAG 4 cut(s) 1649, 2292, 2526, 2760
Zsp2I ATGCAT 1 cut(s) 1812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.