FvH4_6g00530

Photosystem I reaction center subunit XI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014020
Physical Location & Seq
Forward (+)
323188 .. 324283
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00530.t1

Sequence Viewer

Length: 651 bp
ATGGCCAGTGCTGCACCAATGGCCAGCCAGCTCAAGTCCACCTTCACCTCCCCAGTTTCCAGAGCTTTGCTTGCTCCCAAGGGCCTCTCTGCCTCTCCACTCAAGCTCTTTCCTTCTAAGAGATCCTCTTCCTTCACCATCAAAGCCACCCAAACCGACAAGCCATTCCAAGTGATTCAACCAATCAATGGTGACCCTTTCATTGGAAGCTTGGAGACTCCGGTGACATCAAGCCCCTTGATTGCATGGTACCTCTCCAACCTCCCTGCCTACAGAACAGCAGTGAGCCCACTTTTGAGGGGAGTTGAGGTGGGCCTGGCTCATGGATATCTCTTGGTCGGCCCATTCGTCAAGGCAGGCCCATTGAGGAACACCGAAGTAGCTGGGGCAGCTGGCTCCTTGGCAGCTGCTGGTCTTGTTGTCATCCTCAGTGTTTGCTTAACCATGTACGGCATTGCATCCTTCAAGGAGGGAGAACCATCCACAGCTCCTTCTTTGACCTTAACCGGCCGCAAGAAGGAGCCCGACCAGCTCCAAACCGCCGAAGGATGGGCCAAATTCACCGGAGGGTTCTTTTTCGGAGGGATTTCCGGTGTCACTTGGGCTTACTTCCTCCTCTATGTCCTAAACCTTCCTTACTACGTCAAGTAG

Protein Analysis

217

Amino Acids

22.81

Weight (kDa)

9.65

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaL PF02605 58 - 209 2.6e-59 Photosystem I reaction centre subunit XI
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12800
fragaria_vesca FvH4_6g00530
malus_domestica MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica Prupe.6G361000_v2.0.a1
pyrus_communis pycom04g21530 pycom12g23840
rosa_chinensis RchiOBHm_Chr3g0447921
rosa_laevigata RLG00000025961
rosa_multiflora Rmu_sc0005969.1_g000004
rosa_roxburghii Rroxscaffold_6G00426110
rosa_rugosa Rorug02G0607000
rosa_samantha Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana Rw3G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 2 cut(s) 511, 540
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 3 cut(s) 3, 21, 508
AcsI RAATTY 1 cut(s) 557
AfaI GTAC 2 cut(s) 251, 449
AfiI CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
AgsI TTSAA 2 cut(s) 179, 466
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 9 cut(s) 31, 65, 106, 210, 383, 392, 407, 488, 532
AluI AGCT 9 cut(s) 31, 65, 106, 210, 383, 392, 407, 488, 532
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 8 cut(s) 3, 21, 82, 313, 340, 358, 508, 552
ApeKI GCWGC 4 cut(s) 11, 389, 404, 407
ApoI RAATTY 1 cut(s) 557
Asp718I GGTACC 1 cut(s) 249
AspS9I GGNCC 5 cut(s) 82, 313, 341, 359, 552
AsuHPI GGTGA 5 cut(s) 37, 127, 203, 235, 553
BalI TGGCCA 2 cut(s) 5, 23
BanI GGYRCC 1 cut(s) 249
BanII GRGCYC 2 cut(s) 290, 525
BbvI GCAGC 3 cut(s) 394, 401, 416
BccI CCATC 3 cut(s) 146, 487, 543
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 271
BisI GCNGC 5 cut(s) 12, 390, 405, 408, 511
BlsI GCNGC 5 cut(s) 13, 391, 406, 409, 512
Bme1390I CCNGG 1 cut(s) 317
BmgT120I GGNCC 5 cut(s) 82, 313, 341, 359, 552
BmiI GGNNCC 3 cut(s) 251, 397, 522
BmrFI CCNGG 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 467
BmuI ACTGGG 1 cut(s) 47
BpuEI CTTGAG 2 cut(s) 17, 86
BsaJI CCNNGG 2 cut(s) 78, 399
BsaWI WCCGGW 3 cut(s) 220, 563, 590
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 2 cut(s) 6, 53
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 78, 399
BseGI GGATG 4 cut(s) 423, 458, 479, 554
BseLI CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 2 cut(s) 6, 53
BseRI GAGGAG 1 cut(s) 605
BseX3I CGGCCG 1 cut(s) 508
BseXI GCAGC 3 cut(s) 394, 401, 416
BseYI CCCAGC 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 8 cut(s) 5, 23, 84, 315, 342, 360, 510, 554
BshNI GGYRCC 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 511
BsiSI CCGG 4 cut(s) 221, 507, 564, 591
BslI CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 8 cut(s) 5, 23, 84, 315, 342, 360, 510, 554
Bsp1286I GDGCHC 2 cut(s) 290, 525
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 2 cut(s) 511, 540
BspANI GGCC 8 cut(s) 5, 23, 84, 315, 342, 360, 510, 554
BspCNI CTCAG 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 251, 397, 522
BspPI GGATC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 2 cut(s) 6, 53
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 78, 399
BssMI GATC 1 cut(s) 122
BssT1I CCWWGG 2 cut(s) 78, 399
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 133
BstC8I GCNNGC 5 cut(s) 25, 29, 72, 358, 394
BstDEI CTNAG 2 cut(s) 117, 428
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 4 cut(s) 423, 458, 479, 554
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 389, 529
BstNI CCWGG 1 cut(s) 317
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 394, 401, 416
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 508
BsuRI GGCC 8 cut(s) 5, 23, 84, 315, 342, 360, 510, 554
BtsCI GGATG 4 cut(s) 423, 458, 479, 554
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 3 cut(s) 13, 288, 436
Cac8I GCNNGC 5 cut(s) 25, 29, 72, 358, 394
CaiI CAGNNNCTG 1 cut(s) 410
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 5 cut(s) 82, 313, 341, 359, 552
Csp6I GTAC 2 cut(s) 250, 448
CviAII CATG 3 cut(s) 246, 323, 445
CviQI GTAC 2 cut(s) 250, 448
DdeI CTNAG 2 cut(s) 117, 428
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
EaeI YGGCCR 3 cut(s) 3, 21, 508
EagI CGGCCG 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 508
Eco130I CCWWGG 2 cut(s) 78, 399
Eco24I GRGCYC 2 cut(s) 290, 525
Eco32I GATATC 1 cut(s) 329
Eco52I CGGCCG 1 cut(s) 508
Eco91I GGTNACC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 78, 399
EcoT38I GRGCYC 2 cut(s) 290, 525
ErhI CCWWGG 2 cut(s) 78, 399
FaeI CATG 3 cut(s) 249, 326, 448
FaiI YATR 4 cut(s) 247, 324, 446, 621
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 3 cut(s) 245, 322, 444
Fnu4HI GCNGC 5 cut(s) 12, 390, 405, 408, 511
FokI GGATG 4 cut(s) 410, 445, 466, 561
FriOI GRGCYC 2 cut(s) 290, 525
Fsp4HI GCNGC 5 cut(s) 12, 390, 405, 408, 511
GluI GCNGC 5 cut(s) 12, 390, 405, 408, 511
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 8 cut(s) 5, 23, 84, 315, 342, 360, 510, 554
HapII CCGG 4 cut(s) 221, 507, 564, 591
Hin1II CATG 3 cut(s) 249, 326, 448
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 2 cut(s) 175, 217
HpaII CCGG 4 cut(s) 221, 507, 564, 591
HphI GGTGA 5 cut(s) 37, 127, 203, 235, 553
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 581
Hpy188III TCNNGA 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 8 cut(s) 52, 123, 142, 472, 501, 511, 539, 641
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 3 cut(s) 14, 245, 458
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 389, 529
HpyF3I CTNAG 2 cut(s) 117, 428
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 3 cut(s) 249, 326, 448
KpnI GGTACC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 122
LmnI GCTCC 5 cut(s) 79, 401, 493, 520, 537
Lsp1109I GCAGC 3 cut(s) 394, 401, 416
LweI GCATC 1 cut(s) 467
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 3 cut(s) 191, 223, 595
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 120
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 290, 525
MlsI TGGCCA 2 cut(s) 5, 23
MluCI AATT 1 cut(s) 557
MluNI TGGCCA 2 cut(s) 5, 23
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 282
Mox20I TGGCCA 2 cut(s) 5, 23
MscI TGGCCA 2 cut(s) 5, 23
MseI TTAA 2 cut(s) 440, 503
Msp20I TGGCCA 2 cut(s) 5, 23
MspA1I CMGCKG 2 cut(s) 392, 407
MspI CCGG 4 cut(s) 221, 507, 564, 591
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 389, 529
NdeII GATC 1 cut(s) 122
NlaIII CATG 3 cut(s) 249, 326, 448
NlaIV GGNNCC 3 cut(s) 251, 397, 522
NmuCI GTSAC 3 cut(s) 191, 223, 595
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 5 cut(s) 13, 391, 406, 409, 512
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 315
PspEI GGTNACC 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 3 cut(s) 251, 397, 522
PspPI GGNCC 5 cut(s) 82, 313, 341, 359, 552
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 2 cut(s) 392, 407
RsaI GTAC 2 cut(s) 251, 449
RsaNI GTAC 2 cut(s) 250, 448
SaqAI TTAA 2 cut(s) 440, 503
SatI GCNGC 5 cut(s) 12, 390, 405, 408, 511
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 5 cut(s) 82, 313, 341, 359, 552
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 2 cut(s) 290, 525
SfaNI GCATC 1 cut(s) 467
SfcI CTRYAG 1 cut(s) 271
SmlI CTYRAG 2 cut(s) 32, 101
SmoI CTYRAG 2 cut(s) 32, 101
Sse9I AATT 1 cut(s) 557
SsiI CCGC 2 cut(s) 511, 540
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 2 cut(s) 78, 399
TaiI ACGT 1 cut(s) 645
TasI AATT 1 cut(s) 557
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 440, 503
Tru9I TTAA 2 cut(s) 440, 503
TscAI CASTG 3 cut(s) 13, 288, 436
TseFI GTSAC 3 cut(s) 191, 223, 595
TseI GCWGC 4 cut(s) 11, 389, 404, 407
Tsp45I GTSAC 3 cut(s) 191, 223, 595
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 3 cut(s) 13, 288, 436
Van91I CCANNNNNTGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.