Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014020

Physical Location & Seq

Genomic Coordinates Reverse (-)

24298730 .. 24300237

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCTCAGCTTCTCCAATGGCCAGCCAGCTTAAATCCAACTTCACCTCTCCAATCACCACCAGACCTGCCTTGCTTTCTCCCAAGGGCCTCTCTGCCTCCCCACTCAGGCTCTTCCCTTCCAAGAGACTCTCTTCCTTCTCCATCAAGGCTGTCCAATCTGACAAGCAAAATTTCCAAGTGATTCAACCCATCAACGGTGATCCTTTCATTGGAAGCTTGGAGACTCCAGTGACATCAAGCCCTTTAATTGCCTGGTACTTGTCCAACCTCCCAGCCTACAGGACAGCAGTCAGCCCACTTCTCCGGGGTGTTGAGGTGGGTCTAGCCCACGGTTACCTTCTGGTAGGCCCGTTTGTCAAGACTGGCCCATTGAGGAACACTCCCTATGCCGGAGGAGCTGGCTCCTTGGCTGCTGCTGGTCTTGTGGTCATCCTAACCCTTTGCTTGACAATCTATGGAATTTCCTCCTTCAAGGAAGGAGAGCCGTCCTCCGCGCCCGCTTTGACATTGACCGGCCGAAAGAAGGAGCCCGATCAGCTCCAAACCGCCGAAGGGTGGTCTAAATTCACCGGTGGGTTCTTCTTCGGAGGCATTTCGGGCGTCACTTGGGCCTACTTCCTCCTCTATGTCGTAAACCTTCCTTACTACTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsaL

Protein Analysis

220

Amino Acids

23.34

Weight (kDa)

9.74

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12800
fragaria_vesca	FvH4_6g00530
malus_domestica	MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica	Prupe.6G361000_v2.0.a1
pyrus_communis	pycom04g21530 pycom12g23840
rosa_chinensis	RchiOBHm_Chr3g0447921
rosa_laevigata	RLG00000025961
rosa_multiflora	Rmu_sc0005969.1_g000004
rosa_roxburghii	Rroxscaffold_6G00426110
rosa_rugosa	Rorug02G0607000
rosa_samantha	Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana	Rw3G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccII	CGCG	1 cut(s)	497
AciI	CCGC	3 cut(s)	495, 501, 549
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	21, 517
AcsI	RAATTY	3 cut(s)	172, 462, 566
AcyI	GRCGYC	1 cut(s)	603
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	7 cut(s)	108, 197, 212, 392, 526, 555, 558
AgeI	ACCGGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	188, 475, 655
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	5 cut(s)	11, 31, 219, 401, 541
AluI	AGCT	5 cut(s)	11, 31, 219, 401, 541
Alw26I	GTCTC	2 cut(s)	121, 218
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	7 cut(s)	3, 21, 88, 349, 367, 517, 612
ApeKI	GCWGC	2 cut(s)	413, 416
ApoI	RAATTY	3 cut(s)	172, 462, 566
AsiGI	ACCGGT	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	4 cut(s)	88, 350, 368, 612
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	37, 49, 212, 562
BalI	TGGCCA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	400, 403
BccI	CCATC	2 cut(s)	152, 200
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	121, 218
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	414, 417
BlsI	GCNGC	2 cut(s)	415, 418
Bme1390I	CCNGG	2 cut(s)	256, 308
BmgT120I	GGNCC	4 cut(s)	88, 350, 368, 612
BmiI	GGNNCC	2 cut(s)	406, 531
BmrFI	CCNGG	2 cut(s)	256, 308
BoxI	GACNNNNGTC	1 cut(s)	290
BplI	GAGNNNNNCTC	4 cut(s)	367, 399, 476, 508
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	603
BsaJI	CCNNGG	4 cut(s)	84, 307, 331, 408
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	7 cut(s)	108, 197, 212, 392, 526, 555, 558
Bse118I	RCCGGY	2 cut(s)	515, 572
Bse1I	ACTGG	2 cut(s)	230, 370
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	84, 307, 331, 408
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	7 cut(s)	108, 197, 212, 392, 526, 555, 558
BseMII	CTCAG	2 cut(s)	21, 121
BseNI	ACTGG	2 cut(s)	230, 370
BseRI	GAGGAG	2 cut(s)	411, 614
BseX3I	CGGCCG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	400, 403
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	7 cut(s)	5, 23, 90, 351, 369, 519, 614
BshTI	ACCGGT	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	520
BsiSI	CCGG	4 cut(s)	307, 393, 516, 573
BslI	CCNNNNNNNGG	7 cut(s)	108, 197, 212, 392, 526, 555, 558
BsmAI	GTCTC	2 cut(s)	121, 218
BsnI	GGCC	7 cut(s)	5, 23, 90, 351, 369, 519, 614
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	202, 535
BspACI	CCGC	3 cut(s)	495, 501, 549
BspANI	GGCC	7 cut(s)	5, 23, 90, 351, 369, 519, 614
BspCNI	CTCAG	2 cut(s)	20, 120
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	406, 531
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	515, 572
BsrI	ACTGG	2 cut(s)	230, 370
BssAI	RCCGGY	2 cut(s)	515, 572
BssECI	CCNNGG	4 cut(s)	84, 307, 331, 408
BssMI	GATC	2 cut(s)	202, 535
BssNI	GRCGYC	1 cut(s)	603
BssT1I	CCWWGG	2 cut(s)	84, 408
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	200, 335
Bst6I	CTCTTC	2 cut(s)	119, 139
BstACI	GRCGYC	1 cut(s)	603
BstC8I	GCNNGC	4 cut(s)	25, 29, 403, 501
BstDEI	CTNAG	2 cut(s)	7, 107
BstDSI	CCRYGG	1 cut(s)	331
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	205, 538
BstMAI	GTCTC	2 cut(s)	121, 218
BstMBI	GATC	2 cut(s)	202, 535
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 538, 600
BstNI	CCWGG	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	290
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	254, 306
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	400, 403
BstZI	CGGCCG	1 cut(s)	517
BsuRI	GGCC	7 cut(s)	5, 23, 90, 351, 369, 519, 614
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	4 cut(s)	25, 29, 403, 501
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	2 cut(s)	515, 572
Cfr13I	GGNCC	4 cut(s)	88, 350, 368, 612
CseI	GACGC	1 cut(s)	592
Csp6I	GTAC	1 cut(s)	259
CspAI	ACCGGT	1 cut(s)	572
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	7, 107
DpnI	GATC	2 cut(s)	204, 537
DpnII	GATC	2 cut(s)	202, 535
EaeI	YGGCCR	2 cut(s)	21, 517
EagI	CGGCCG	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	119, 139
EarI	CTCTTC	2 cut(s)	119, 139
EclXI	CGGCCG	1 cut(s)	517
Eco130I	CCWWGG	2 cut(s)	84, 408
Eco24I	GRGCYC	1 cut(s)	534
Eco52I	CGGCCG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	2 cut(s)	84, 408
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	84, 408
FaiI	YATR	3 cut(s)	390, 459, 630
FauI	CCCGC	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	414, 417
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	2 cut(s)	414, 417
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	2 cut(s)	414, 417
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	7 cut(s)	5, 23, 90, 351, 369, 519, 614
HapII	CCGG	4 cut(s)	307, 393, 516, 573
HgaI	GACGC	1 cut(s)	592
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	1 cut(s)	603
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	3 cut(s)	129, 184, 226
HpaII	CCGG	4 cut(s)	307, 393, 516, 573
HphI	GGTGA	4 cut(s)	37, 49, 212, 562
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	2 cut(s)	163, 590
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	8 cut(s)	129, 148, 350, 473, 481, 520, 548, 650
HpyCH4III	ACNGT	2 cut(s)	200, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 538, 600
HpyF3I	CTNAG	2 cut(s)	7, 107
Hsp92I	GRCGYC	1 cut(s)	603
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	202, 535
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	4 cut(s)	398, 410, 529, 546
Lsp1109I	GCAGC	2 cut(s)	400, 403
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	3 cut(s)	232, 335, 604
MalI	GATC	2 cut(s)	204, 537
MboI	GATC	2 cut(s)	202, 535
MboII	GAAGA	4 cut(s)	106, 126, 574, 577
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	172, 249, 462, 566
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	123, 220
MmeI	TCCRAC	2 cut(s)	63, 291
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	2 cut(s)	33, 248
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	4 cut(s)	307, 393, 516, 573
MspR9I	CCNGG	2 cut(s)	256, 308
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	398, 538, 600
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	202, 535
NlaIV	GGNNCC	2 cut(s)	406, 531
NmuCI	GTSAC	2 cut(s)	232, 604
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	415, 418
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
PshAI	GACNNNNGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	406, 531
PspPI	GGNCC	4 cut(s)	88, 350, 368, 612
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	33, 248
SatI	GCNGC	2 cut(s)	414, 417
Sau3AI	GATC	2 cut(s)	202, 535
Sau96I	GGNCC	4 cut(s)	88, 350, 368, 612
SchI	GAGTC	2 cut(s)	123, 220
ScrFI	CCNGG	2 cut(s)	256, 308
SduI	GDGCHC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	280
SgrAI	CRCCGGYG	1 cut(s)	572
Sse9I	AATT	4 cut(s)	172, 249, 462, 566
SsiI	CCGC	3 cut(s)	495, 501, 549
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	254, 306
StyI	CCWWGG	2 cut(s)	84, 408
TaaI	ACNGT	2 cut(s)	200, 335
TasI	AATT	4 cut(s)	172, 249, 462, 566
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	33, 248
Tru9I	TTAA	2 cut(s)	33, 248
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	232, 604
TseI	GCWGC	2 cut(s)	413, 416
Tsp45I	GTSAC	2 cut(s)	232, 604
TspDTI	ATGAA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	3 cut(s)	172, 462, 566
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.