Rw3G000490

Photosystem I reaction center subunit XI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014020
Physical Location & Seq
Forward (+)
434348 .. 435781
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000490.1

Sequence Viewer

Length: 627 bp
ATGGCCAGTGCTTCACCAATGGCCAGCCAGCTCAAGTCCAGCTTCACCTCCCCAGTCTCTAGAGCTTTGCTTGTTCCCAAGGGCCTCTCTGCCTCTCCGCTCAGGCTCTTGCATTCTAAGAGATCCTCTTCCTTCACCATCAAAGCCACCCAAACCGACAAGCCATTCCAAGTGATTCAGCCAATCAATGGTGACCCCTTCATTGGAAGCTTGGAGACTCCAGTGACATCCAGCCCTTTGATTGCATGGTACCTCTCCAACCTCCCAGCCTACAGGACAGCAGTGAGCCCACTTTTGAGGGGAATTGAGGTGGGCCTGGCCCATGGATTCCTCTTGGTCGGCCCATTCGTCAAGGCAGGCCCATTGAGGAACACTGAAGTGGCTGGGCCAGCTGGCTCCTTGGCAGCTGCTGGTCTTGTGGTCATCCTCAGCGTTTGCTTGACCATGTACGGAATTGCATCCTTCAAGGAGGGAGACCCGTCCACAGCTCCATCTTTGACCTTGACCGGCCGCAAGAAGGAGCCGGACCAGCTCCAGACCGCCGAGGGATGGGCCAAATTCACCGGAGGGTTCTTTTTCGGAGGGATTTCGGGTGTCACTGGGCTTACTTCCTCCTCTATGTCATAA

Protein Analysis

208

Amino Acids

21.58

Weight (kDa)

9.81

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaL PF02605 58 - 199 6.1e-54 Photosystem I reaction centre subunit XI
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0014020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12800
fragaria_vesca FvH4_6g00530
malus_domestica MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica Prupe.6G361000_v2.0.a1
pyrus_communis pycom04g21530 pycom12g23840
rosa_chinensis RchiOBHm_Chr3g0447921
rosa_laevigata RLG00000025961
rosa_multiflora Rmu_sc0005969.1_g000004
rosa_roxburghii Rroxscaffold_6G00426110
rosa_rugosa Rorug02G0607000
rosa_samantha Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana Rw3G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 100
AciI CCGC 3 cut(s) 98, 511, 540
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 3 cut(s) 3, 21, 508
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 2 cut(s) 251, 449
AfiI CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
AgsI TTSAA 1 cut(s) 466
AjnI CCWGG 1 cut(s) 315
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 8 cut(s) 31, 42, 65, 210, 392, 407, 488, 532
AluI AGCT 8 cut(s) 31, 42, 65, 210, 392, 407, 488, 532
Alw26I GTCTC 3 cut(s) 61, 209, 468
AlwI GGATC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 410
ApeKI GCWGC 2 cut(s) 404, 407
ApoI RAATTY 1 cut(s) 557
Asp718I GGTACC 1 cut(s) 249
AspS9I GGNCC 8 cut(s) 82, 313, 319, 341, 359, 386, 526, 552
AsuHPI GGTGA 5 cut(s) 6, 37, 127, 203, 553
AvaII GGWCC 1 cut(s) 526
BalI TGGCCA 2 cut(s) 5, 23
BanI GGYRCC 1 cut(s) 249
BanII GRGCYC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 428
BbvI GCAGC 2 cut(s) 394, 416
BccI CCATC 3 cut(s) 146, 499, 543
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 3 cut(s) 61, 209, 468
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 271
BisI GCNGC 3 cut(s) 405, 408, 511
BlsI GCNGC 3 cut(s) 406, 409, 512
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 8 cut(s) 82, 313, 319, 341, 359, 386, 526, 552
BmiI GGNNCC 3 cut(s) 251, 397, 522
BmrFI CCNGG 1 cut(s) 317
BmrI ACTGGG 2 cut(s) 47, 609
BmsI GCATC 1 cut(s) 467
BmuI ACTGGG 2 cut(s) 47, 609
BpmI CTGGAG 2 cut(s) 204, 518
Bpu10I CCTNAGC 2 cut(s) 101, 428
BpuEI CTTGAG 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 4 cut(s) 78, 322, 399, 543
BsaWI WCCGGW 1 cut(s) 563
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 4 cut(s) 6, 53, 221, 604
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 4 cut(s) 78, 322, 399, 543
BseGI GGATG 4 cut(s) 227, 423, 458, 554
BseLI CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
BseMII CTCAG 2 cut(s) 115, 442
BseNI ACTGG 4 cut(s) 6, 53, 221, 604
BseRI GAGGAG 1 cut(s) 604
BseX3I CGGCCG 1 cut(s) 508
BseXI GCAGC 2 cut(s) 394, 416
BseYI CCCAGC 2 cut(s) 265, 383
Bsh1285I CGRYCG 1 cut(s) 511
BshNI GGYRCC 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 511
BsiSI CCGG 3 cut(s) 507, 524, 564
BslI CCNNNNNNNGG 4 cut(s) 188, 203, 517, 549
BsmAI GTCTC 3 cut(s) 61, 209, 468
BsmI GAATGC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 122
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 3 cut(s) 98, 511, 540
BspCNI CTCAG 2 cut(s) 114, 441
BspLI GGNNCC 3 cut(s) 251, 397, 522
BspPI GGATC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 4 cut(s) 6, 53, 221, 604
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 4 cut(s) 78, 322, 399, 543
BssMI GATC 1 cut(s) 122
BssT1I CCWWGG 3 cut(s) 78, 322, 399
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 133
BstC8I GCNNGC 5 cut(s) 25, 29, 358, 390, 394
BstDEI CTNAG 3 cut(s) 101, 117, 428
BstDSI CCRYGG 1 cut(s) 322
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 4 cut(s) 227, 423, 458, 554
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 3 cut(s) 61, 209, 468
BstMBI GATC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 2 cut(s) 389, 529
BstNI CCWGG 1 cut(s) 317
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 394, 416
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 4 cut(s) 227, 423, 458, 554
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 5 cut(s) 13, 228, 288, 372, 597
Cac8I GCNNGC 5 cut(s) 25, 29, 358, 390, 394
CaiI CAGNNNCTG 1 cut(s) 410
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 8 cut(s) 82, 313, 319, 341, 359, 386, 526, 552
Csp6I GTAC 2 cut(s) 250, 448
CviAII CATG 3 cut(s) 246, 323, 445
CviQI GTAC 2 cut(s) 250, 448
DdeI CTNAG 3 cut(s) 101, 117, 428
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
EaeI YGGCCR 3 cut(s) 3, 21, 508
EagI CGGCCG 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 508
Eco130I CCWWGG 3 cut(s) 78, 322, 399
Eco24I GRGCYC 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 526
Eco52I CGGCCG 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 396
Eco91I GGTNACC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 3 cut(s) 78, 322, 399
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 3 cut(s) 78, 322, 399
FaeI CATG 3 cut(s) 249, 326, 448
FaiI YATR 5 cut(s) 247, 324, 446, 620, 625
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 3 cut(s) 245, 322, 444
Fnu4HI GCNGC 3 cut(s) 405, 408, 511
FokI GGATG 4 cut(s) 214, 410, 445, 561
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 405, 408, 511
FspBI CTAG 1 cut(s) 60
GluI GCNGC 3 cut(s) 405, 408, 511
GsaI CCCAGC 2 cut(s) 269, 387
GsuI CTGGAG 2 cut(s) 204, 518
HapII CCGG 3 cut(s) 507, 524, 564
Hin1II CATG 3 cut(s) 249, 326, 448
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 3 cut(s) 175, 217, 327
HpaII CCGG 3 cut(s) 507, 524, 564
HphI GGTGA 5 cut(s) 6, 37, 127, 203, 553
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 1 cut(s) 581
Hpy188III TCNNGA 2 cut(s) 60, 535
Hpy8I GTNNAC 1 cut(s) 483
HpyAV CCTTC 4 cut(s) 142, 208, 472, 511
HpyCH4V TGCA 3 cut(s) 112, 245, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 529
HpyF3I CTNAG 3 cut(s) 101, 117, 428
Hsp92II CATG 3 cut(s) 249, 326, 448
KpnI GGTACC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 122
LmnI GCTCC 4 cut(s) 401, 493, 520, 537
Lsp1109I GCAGC 2 cut(s) 394, 416
LweI GCATC 1 cut(s) 467
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 191, 223, 595
MalI GATC 1 cut(s) 124
MbiI CCGCTC 1 cut(s) 100
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 120
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 2 cut(s) 5, 23
MluCI AATT 3 cut(s) 303, 453, 557
MluNI TGGCCA 2 cut(s) 5, 23
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 282
Mox20I TGGCCA 2 cut(s) 5, 23
MscI TGGCCA 2 cut(s) 5, 23
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 2 cut(s) 5, 23
MspA1I CMGCKG 2 cut(s) 392, 407
MspI CCGG 3 cut(s) 507, 524, 564
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 389, 529
NcoI CCATGG 1 cut(s) 322
NdeII GATC 1 cut(s) 122
NlaIII CATG 3 cut(s) 249, 326, 448
NlaIV GGNNCC 3 cut(s) 251, 397, 522
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 3 cut(s) 191, 223, 595
OliI CACNNNNGTG 1 cut(s) 377
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 175, 327
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 3 cut(s) 406, 409, 512
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 315
PspEI GGTNACC 1 cut(s) 191
PspFI CCCAGC 2 cut(s) 265, 383
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 3 cut(s) 251, 397, 522
PspPI GGNCC 8 cut(s) 82, 313, 319, 341, 359, 386, 526, 552
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 2 cut(s) 392, 407
RsaI GTAC 2 cut(s) 251, 449
RsaNI GTAC 2 cut(s) 250, 448
RseI CAYNNNNRTG 1 cut(s) 377
SatI GCNGC 3 cut(s) 405, 408, 511
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 8 cut(s) 82, 313, 319, 341, 359, 386, 526, 552
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 1 cut(s) 467
SfcI CTRYAG 1 cut(s) 271
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 303, 453, 557
SsiI CCGC 3 cut(s) 98, 511, 540
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 3 cut(s) 78, 322, 399
TasI AATT 3 cut(s) 303, 453, 557
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 2 cut(s) 175, 327
TscAI CASTG 5 cut(s) 13, 228, 288, 379, 604
TseFI GTSAC 3 cut(s) 191, 223, 595
TseI GCWGC 2 cut(s) 404, 407
Tsp45I GTSAC 3 cut(s) 191, 223, 595
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 5 cut(s) 13, 228, 288, 379, 604
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 1 cut(s) 557
XbaI TCTAGA 1 cut(s) 59
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.