Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014020

Physical Location & Seq

Genomic Coordinates Reverse (-)

32636681 .. 32639615

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1260300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCTCAGCTTCTCCAATGGCTAGCCAACTTAAATCCAACTTCACTTCTCCAATCACCACCAGACCTGCCTTGCTTTCTCCCAAAGGCCTCTCTGCCTCCCCACTCAAGCTCTTCCCTTCCAAGAGACTCTCTTCCTTCTCCATCAAGGCTGTCCAATCTGACAAGCAAAATTTCCAAGTGATTCAACCCATCAACGGTGATCCTTTCATTGGAAGCTTGGAGACTCCAGTGACATCAAGCCCTTTGATTGCCTGGTACTTGTCCAACCTCCCAGCCTACAGGACAGCAGTCAGCCCACTTCTCAGGGGTATTGAGGTGGGTCTGGCCCACGGTTTCCTTCTGGTAGGCCCATTTGTCAAGACTGGCCCATTGAGGAACACTCCCTATGCCGGAGGAGCTGGCTCCTTGGCTGCTGCTGGTCTTGTGGTCATCCTAACCCTTTGCTTGACAATCTATGGAATTTCCTCCTTCAAGGAAGGAGAGCCGTCCTCCGCGCCCGCTTTGACATTGACCGGCCGAAAGAAGGAGCCCGATCAGCTCCAAACCGCCGAGGGGTGGTCCAAATTCACCGGCGGGTTCTTCTTCGGTGGCATTTCGGGTGTCACTTGGGCCTACTTCCTCCTCTATGTTGTAAACCTTCCTTACTTCTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsaL

Protein Analysis

220

Amino Acids

23.3

Weight (kDa)

9.78

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaL	PF02605	61 - 212	1.4e-58	Photosystem I reaction centre subunit XI

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12800
fragaria_vesca	FvH4_6g00530
malus_domestica	MD04G1244400.v1.1 MD12G1260300.v1.1
prunus_persica	Prupe.6G361000_v2.0.a1
pyrus_communis	pycom04g21530 pycom12g23840
rosa_chinensis	RchiOBHm_Chr3g0447921
rosa_laevigata	RLG00000025961
rosa_multiflora	Rmu_sc0005969.1_g000004
rosa_roxburghii	Rroxscaffold_6G00426110
rosa_rugosa	Rorug02G0607000
rosa_samantha	Rh3AG006300 Rh3BG006000 Rh3CG006200 Rh3DG006500
rosa_wichuraiana	Rw3G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccII	CGCG	1 cut(s)	497
AciI	CCGC	4 cut(s)	495, 501, 549, 576
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	3 cut(s)	172, 462, 566
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	6 cut(s)	197, 212, 392, 526, 555, 558
AgsI	TTSAA	3 cut(s)	188, 475, 655
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	5 cut(s)	11, 112, 219, 401, 541
AluI	AGCT	5 cut(s)	11, 112, 219, 401, 541
Alw26I	GTCTC	2 cut(s)	121, 218
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	7 cut(s)	3, 88, 327, 349, 367, 517, 612
ApeKI	GCWGC	2 cut(s)	413, 416
ApoI	RAATTY	3 cut(s)	172, 462, 566
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	5 cut(s)	328, 350, 368, 561, 612
AsuHPI	GGTGA	3 cut(s)	49, 212, 562
AsuNHI	GCTAGC	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	400, 403
BccI	CCATC	2 cut(s)	152, 200
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	121, 218
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	414, 417
BlsI	GCNGC	2 cut(s)	415, 418
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	561
BmgT120I	GGNCC	5 cut(s)	328, 350, 368, 561, 612
BmiI	GGNNCC	2 cut(s)	406, 531
BmrFI	CCNGG	1 cut(s)	256
BmtI	GCTAGC	1 cut(s)	27
BoxI	GACNNNNGTC	1 cut(s)	290
BplI	GAGNNNNNCTC	4 cut(s)	367, 399, 476, 508
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	331, 408, 552
Bsc4I	CCNNNNNNNGG	6 cut(s)	197, 212, 392, 526, 555, 558
Bse118I	RCCGGY	2 cut(s)	515, 572
Bse1I	ACTGG	2 cut(s)	230, 370
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	3 cut(s)	331, 408, 552
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	6 cut(s)	197, 212, 392, 526, 555, 558
BseMII	CTCAG	2 cut(s)	21, 319
BseNI	ACTGG	2 cut(s)	230, 370
BseRI	GAGGAG	2 cut(s)	411, 614
BseX3I	CGGCCG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	400, 403
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	7 cut(s)	5, 90, 329, 351, 369, 519, 614
BsiEI	CGRYCG	1 cut(s)	520
BsiSI	CCGG	3 cut(s)	393, 516, 573
BslI	CCNNNNNNNGG	6 cut(s)	197, 212, 392, 526, 555, 558
BsmAI	GTCTC	2 cut(s)	121, 218
BsnI	GGCC	7 cut(s)	5, 90, 329, 351, 369, 519, 614
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	202, 535
BspACI	CCGC	4 cut(s)	495, 501, 549, 576
BspANI	GGCC	7 cut(s)	5, 90, 329, 351, 369, 519, 614
BspCNI	CTCAG	2 cut(s)	20, 318
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	406, 531
BspMI	ACCTGC	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	515, 572
BsrI	ACTGG	2 cut(s)	230, 370
BssAI	RCCGGY	2 cut(s)	515, 572
BssECI	CCNNGG	3 cut(s)	331, 408, 552
BssMI	GATC	2 cut(s)	202, 535
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	200, 335
Bst6I	CTCTTC	2 cut(s)	119, 139
BstC8I	GCNNGC	3 cut(s)	25, 403, 501
BstDEI	CTNAG	2 cut(s)	7, 305
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	205, 538
BstMAI	GTCTC	2 cut(s)	121, 218
BstMBI	GATC	2 cut(s)	202, 535
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 538
BstNI	CCWGG	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	400, 403
BstZI	CGGCCG	1 cut(s)	517
BsuRI	GGCC	7 cut(s)	5, 90, 329, 351, 369, 519, 614
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	25, 403, 501
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	2 cut(s)	515, 572
Cfr13I	GGNCC	5 cut(s)	328, 350, 368, 561, 612
Csp6I	GTAC	1 cut(s)	259
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	7, 305
DpnI	GATC	2 cut(s)	204, 537
DpnII	GATC	2 cut(s)	202, 535
EaeI	YGGCCR	1 cut(s)	517
EagI	CGGCCG	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	119, 139
EarI	CTCTTC	2 cut(s)	119, 139
EclXI	CGGCCG	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	561
Eco52I	CGGCCG	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	408
FaiI	YATR	3 cut(s)	390, 459, 630
FauI	CCCGC	2 cut(s)	508, 569
Fnu4HI	GCNGC	2 cut(s)	414, 417
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	2 cut(s)	414, 417
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	2 cut(s)	414, 417
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	7 cut(s)	5, 90, 329, 351, 369, 519, 614
HapII	CCGG	3 cut(s)	393, 516, 573
HhaI	GCGC	1 cut(s)	499
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	3 cut(s)	129, 184, 226
HpaII	CCGG	3 cut(s)	393, 516, 573
HphI	GGTGA	3 cut(s)	49, 212, 562
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	7 cut(s)	129, 148, 350, 473, 481, 520, 650
HpyCH4III	ACNGT	2 cut(s)	200, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 538
HpyF3I	CTNAG	2 cut(s)	7, 305
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	202, 535
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	4 cut(s)	398, 410, 529, 546
Lsp1109I	GCAGC	2 cut(s)	400, 403
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	232, 604
MalI	GATC	2 cut(s)	204, 537
MboI	GATC	2 cut(s)	202, 535
MboII	GAAGA	5 cut(s)	106, 126, 574, 577, 643
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	3 cut(s)	172, 462, 566
MlyI	GAGTC	2 cut(s)	123, 220
MmeI	TCCRAC	2 cut(s)	63, 291
MseI	TTAA	1 cut(s)	33
MspI	CCGG	3 cut(s)	393, 516, 573
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	398, 538
NdeII	GATC	2 cut(s)	202, 535
NheI	GCTAGC	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	406, 531
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	232, 604
PceI	AGGCCT	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	415, 418
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
PshAI	GACNNNNGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	406, 531
PspPI	GGNCC	5 cut(s)	328, 350, 368, 561, 612
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	414, 417
Sau3AI	GATC	2 cut(s)	202, 535
Sau96I	GGNCC	5 cut(s)	328, 350, 368, 561, 612
SchI	GAGTC	2 cut(s)	123, 220
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	534
SetI	ASST	9 cut(s)	13, 70, 114, 221, 273, 321, 403, 543, 642
SfcI	CTRYAG	1 cut(s)	280
SgrAI	CRCCGGYG	1 cut(s)	572
SinI	GGWCC	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	172, 462, 566
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	4 cut(s)	495, 501, 549, 576
SspMI	CTAG	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	200, 335
TasI	AATT	3 cut(s)	172, 462, 566
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	232, 604
TseI	GCWGC	2 cut(s)	413, 416
Tsp45I	GTSAC	2 cut(s)	232, 604
TspDTI	ATGAA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	561
XapI	RAATTY	3 cut(s)	172, 462, 566
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.