Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015267

Physical Location & Seq

Genomic Coordinates Reverse (-)

7585869 .. 7587099

Gene Structure 1231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAGCATGAAATGATGAACATCAAGCCAAGATGCATAACCATCTTCTTTCTTCTTTTTGCTTTGCTTCTTGGAAATTATGTAGTTCAAGCCTCAAGACCTCGTTCTATCGAAAATACGGTCTCCCTTCTCCCACAAGTACATCTCCTGAATTCAAGGAGGAGGCATATGATAGGGTCGACAGCACCAACTTGTACGTACAACGAGTGCAGAGGATGCAGATACAAGTGCAGAGCAGAGCAAGTTCCAGTCGAAGGAAATGACCCTATCAACAGTGCTTATCATTATAGATGTGTTTGTCATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stomagen

Protein Analysis

102

Amino Acids

11.84

Weight (kDa)

9.46

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stomagen	PF16851	53 - 101	7.1e-33	Stomagen

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12970
fragaria_vesca	FvH4_2g17950
malus_domestica	MD05G1163400.v1.1 MD10G1153200.v1.1
prunus_persica	Prupe.8G192000_v2.0.a1
pyrus_communis	pycom05g15280
rosa_chinensis	RchiOBHm_Chr6g0283181
rosa_laevigata	RLG00000012838
rosa_multiflora	Rmu_sc0014685.1_g000009
rosa_roxburghii	Rroxscaffold_7G00185680
rosa_rugosa	Rorug06G0152400
rosa_samantha	Rh6AG264900 Rh6BG267800 Rh6CG266800 Rh6DG260100
rosa_wichuraiana	Rw6G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	3 cut(s)	141, 196, 200
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	89, 156
Alw26I	GTCTC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	127
BmsI	GCATC	2 cut(s)	23, 206
BpuEI	CTTGAG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	20
BseGI	GGATG	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	175
BsgI	GTGCAG	2 cut(s)	229, 250
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	127
Bso31I	GGTCTC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	121, 275
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstSNI	TACGTA	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	140, 195, 199
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	2 cut(s)	28, 92
CviKI_1	RGCY	2 cut(s)	28, 92
CviQI	GTAC	3 cut(s)	140, 195, 199
Eco105I	TACGTA	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	38
FaeI	CATG	1 cut(s)	11
FaiI	YATR	7 cut(s)	9, 38, 81, 168, 170, 288, 303
FatI	CATG	1 cut(s)	7
FauNDI	CATATG	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	179
FokI	GGATG	1 cut(s)	228
Hin1II	CATG	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188III	TCNNGA	2 cut(s)	96, 148
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	137, 248
HpyCH4III	ACNGT	2 cut(s)	121, 275
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	36, 210, 219, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	11
LpnPI	CCDG	2 cut(s)	161, 261
LweI	GCATC	2 cut(s)	23, 206
MaeII	ACGT	1 cut(s)	197
MboII	GAAGA	2 cut(s)	37, 44
MluCI	AATT	2 cut(s)	76, 151
MnlI	CCTC	5 cut(s)	103, 111, 153, 156, 206
Mph1103I	ATGCAT	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeI	CATATG	1 cut(s)	168
NlaIII	CATG	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	198
RsaI	GTAC	3 cut(s)	141, 196, 200
RsaNI	GTAC	3 cut(s)	140, 195, 199
SalI	GTCGAC	1 cut(s)	178
SetI	ASST	2 cut(s)	103, 200
SfaNI	GCATC	2 cut(s)	23, 206
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SnaBI	TACGTA	1 cut(s)	198
Sse9I	AATT	2 cut(s)	76, 151
TaaI	ACNGT	2 cut(s)	121, 275
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	111, 179, 252
TasI	AATT	2 cut(s)	76, 151
TatI	WGTACW	1 cut(s)	139
TscAI	CASTG	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	17, 24, 32
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.