MD10G1153200.v1.1

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0015267
Physical Location & Seq
Reverse (-)
24077653 .. 24079044
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1153200.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGCCAAATCCACAAGACCTAAATTACTCTTACCATTCTTCATAATATTAGTCTTTGCAGCCTATGTTGTACAAGGGTCGAGAACTCAAGTAGCAGAACTTCCACACGGTCAAAGGGTCAACGATTTCTCTACATCACAAGGAGAACAACTTAAGCAGAGAAGCAAGGAAAGGATGAACTATGTAAGGAGATTGATGATCGGATCGACAGCACCAACATGCACATACAATGAATGCAGAGGGTGCAAGTACAAGTGCAGAGCTGAGCAAGTCCCTGTGGAGGGCAATGACCCCATCAATAGTGCATACCACTACAGATGTGTTTGTCATGGGTAA

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

9.44

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stomagen PF16851 63 - 110 6.6e-33 Stomagen
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12970
fragaria_vesca FvH4_2g17950
malus_domestica MD05G1163400.v1.1 MD10G1153200.v1.1
prunus_persica Prupe.8G192000_v2.0.a1
pyrus_communis pycom05g15280
rosa_chinensis RchiOBHm_Chr6g0283181
rosa_laevigata RLG00000012838
rosa_multiflora Rmu_sc0014685.1_g000009
rosa_roxburghii Rroxscaffold_7G00185680
rosa_rugosa Rorug06G0152400
rosa_samantha Rh6AG264900 Rh6BG267800 Rh6CG266800 Rh6DG260100
rosa_wichuraiana Rw6G022940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 72, 251
AfiI CCNNNNNNNGG 2 cut(s) 280, 281
AflII CTTAAG 1 cut(s) 152
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
AlwI GGATC 1 cut(s) 211
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 313
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 61
Bpu1102I GCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 281
Bse3DI GCAATG 1 cut(s) 292
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 280, 281
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 277
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 280, 281
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 198, 203
Bsp1720I GCTNAGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 292
BsrGI TGTACA 1 cut(s) 70
BssMI GATC 2 cut(s) 198, 203
Bst4CI ACNGT 1 cut(s) 110
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 2 cut(s) 201, 206
BstMBI GATC 2 cut(s) 198, 203
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 180
Csp6I GTAC 2 cut(s) 71, 250
CviAII CATG 2 cut(s) 219, 329
CviJI RGCY 3 cut(s) 5, 62, 263
CviKI_1 RGCY 3 cut(s) 5, 62, 263
CviQI GTAC 2 cut(s) 71, 250
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 200, 205
DpnII GATC 2 cut(s) 198, 203
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 2 cut(s) 222, 332
FaiI YATR 7 cut(s) 44, 66, 183, 220, 226, 307, 330
FaqI GGGAC 1 cut(s) 257
FatI CATG 2 cut(s) 218, 328
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 222, 332
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 6 cut(s) 59, 222, 237, 246, 258, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 2 cut(s) 222, 332
Kzo9I GATC 2 cut(s) 198, 203
LpnPI CCDG 1 cut(s) 288
Lsp1109I GCAGC 1 cut(s) 71
MalI GATC 2 cut(s) 200, 205
MboI GATC 2 cut(s) 198, 203
MboII GAAGA 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 23
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 233, 274
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 217
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 2 cut(s) 198, 203
NlaIII CATG 2 cut(s) 222, 332
NspI RCATGY 1 cut(s) 222
PctI GAATGC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 61
RsaI GTAC 2 cut(s) 72, 251
RsaNI GTAC 2 cut(s) 71, 250
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 198, 203
SetI ASST 2 cut(s) 22, 265
SfcI CTRYAG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 87, 152
SmoI CTYRAG 2 cut(s) 87, 152
Sse9I AATT 1 cut(s) 23
SspI AATATT 1 cut(s) 48
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 80, 206
TasI AATT 1 cut(s) 23
TatI WGTACW 2 cut(s) 70, 249
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 31, 191, 246
Vha464I CTTAAG 1 cut(s) 152
XceI RCATGY 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.