Prupe.8G192000_v2.0.a1

EPIDERMAL PATTERNING FACTOR-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
18622099 .. 18623493
1395 bp
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UTR
Exon/CDS
Intron
Prupe.8G192000.1

Sequence Viewer

Length: 339 bp
ATGGCCAAATCTACAACAAGACCTAAATTACTCTTACTATTCTTCACATTAATCTTTGCAGCATATGTTTTACAAGGATCCAGAACCCAAGTAGCAGCACTTCCACACCAGCAAAGGGTCTATGATTCTTCTCCACCACAAGAAGAACAACTACTTAAGCAGAGCAGGAAGGAAACCATGAACTACGCAAGGAGATTGATGATTGGATCCACAGCACCAACATGCACTTTTAATGAGTGCAGAGGGTGCAAGTTCAAGTGCAGAGCAGAGCAAGTGCCAGTGGAGGGAAACGACCCAATTAATAGTGCCTACCACTACAGATGTGTGTGCCATAGGTAA

Protein Analysis

113

Amino Acids

12.84

Weight (kDa)

9.47

Isoelectric Point (pI)

68.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12970
fragaria_vesca FvH4_2g17950
malus_domestica MD05G1163400.v1.1 MD10G1153200.v1.1
prunus_persica Prupe.8G192000_v2.0.a1
pyrus_communis pycom05g15280
rosa_chinensis RchiOBHm_Chr6g0283181
rosa_laevigata RLG00000012838
rosa_multiflora Rmu_sc0014685.1_g000009
rosa_roxburghii Rroxscaffold_7G00185680
rosa_rugosa Rorug06G0152400
rosa_samantha Rh6AG264900 Rh6BG267800 Rh6CG266800 Rh6DG260100
rosa_wichuraiana Rw6G022940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 72, 85, 201, 214
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 115, 284
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 256
AlwI GGATC 4 cut(s) 72, 85, 201, 214
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 59, 95
AseI ATTAAT 2 cut(s) 50, 300
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 77, 206
BarI GAAGNNNNNNTAC 4 cut(s) 84, 116, 135, 167
BbvI GCAGC 2 cut(s) 71, 107
BfmI CTRYAG 1 cut(s) 316
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 2 cut(s) 60, 96
BlsI GCNGC 2 cut(s) 61, 97
BmiI GGNNCC 2 cut(s) 79, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 284
Bse1I ACTGG 1 cut(s) 278
BseLI CCNNNNNNNGG 2 cut(s) 115, 284
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 71, 107
BsgI GTGCAG 2 cut(s) 259, 280
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 115, 284
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 77, 206
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 79, 208
BspPI GGATC 4 cut(s) 72, 85, 201, 214
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 278
BssMI GATC 2 cut(s) 77, 206
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 80, 209
BstMBI GATC 2 cut(s) 77, 206
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 71, 107
BstX2I RGATCY 2 cut(s) 77, 206
BstYI RGATCY 2 cut(s) 77, 206
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 285
CviAII CATG 2 cut(s) 178, 222
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 2 cut(s) 79, 208
DpnII GATC 2 cut(s) 77, 206
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 2 cut(s) 181, 225
FaiI YATR 6 cut(s) 64, 66, 123, 179, 223, 333
FatI CATG 2 cut(s) 177, 221
FauNDI CATATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 60, 96
Fsp4HI GCNGC 2 cut(s) 60, 96
GluI GCNGC 2 cut(s) 60, 96
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 181, 225
HinfI GANTC 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 5 cut(s) 59, 225, 240, 249, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 181, 225
Kzo9I GATC 2 cut(s) 77, 206
LpnPI CCDG 4 cut(s) 94, 122, 151, 291
Lsp1109I GCAGC 2 cut(s) 71, 107
MalI GATC 2 cut(s) 79, 208
MboI GATC 2 cut(s) 77, 206
MboII GAAGA 3 cut(s) 34, 120, 155
MflI RGATCY 2 cut(s) 77, 206
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 26, 297
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 236, 277
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 50, 156, 231, 300
MslI CAYNNNNRTG 1 cut(s) 220
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeI CATATG 1 cut(s) 64
NdeII GATC 2 cut(s) 77, 206
NlaIII CATG 2 cut(s) 181, 225
NlaIV GGNNCC 2 cut(s) 79, 208
NspI RCATGY 1 cut(s) 225
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 61, 97
PshBI ATTAAT 2 cut(s) 50, 300
PspN4I GGNNCC 2 cut(s) 79, 208
PsuI RGATCY 2 cut(s) 77, 206
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 4 cut(s) 50, 156, 231, 300
SatI GCNGC 2 cut(s) 60, 96
Sau3AI GATC 2 cut(s) 77, 206
SetI ASST 2 cut(s) 25, 338
SfcI CTRYAG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 26, 297
TasI AATT 2 cut(s) 26, 297
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 4 cut(s) 50, 156, 231, 300
Tru9I TTAA 4 cut(s) 50, 156, 231, 300
TscAI CASTG 1 cut(s) 285
TseI GCWGC 2 cut(s) 59, 95
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 285
Vha464I CTTAAG 1 cut(s) 155
VspI ATTAAT 2 cut(s) 50, 300
XceI RCATGY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.