Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015267

Physical Location & Seq

Genomic Coordinates Reverse (-)

45157284 .. 45158041

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCCAGAGCTAGAATACCTCCTAAATTACTCCTAGTACTGCTTTTCACATTAATCTTTGCAGCTTATGTTATACAGGGATCCAGAACTCAAGTAGCAGCACTCCAAAACCATCAAAGGGTCTATGGTTCCTCTCCTTCAAAGGAGAACAACTTAAGCAGTGAGGAAAAGCAGAACTACGCAAGGAGACTGATGATTGGATCCACAGCACCAACGTGTACTTACAATGAATGCAGAGGATGCAAGTACAAGTGCAGAGCTGAGCAAGTCCCAGTAGAAGGAAATGACCCAATCAATAGTGCTTACCACTACAGATGTGTTTGTCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stomagen

Protein Analysis

110

Amino Acids

12.47

Weight (kDa)

9.44

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stomagen	PF16851	61 - 109	2.5e-33	Stomagen

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12970
fragaria_vesca	FvH4_2g17950
malus_domestica	MD05G1163400.v1.1 MD10G1153200.v1.1
prunus_persica	Prupe.8G192000_v2.0.a1
pyrus_communis	pycom05g15280
rosa_chinensis	RchiOBHm_Chr6g0283181
rosa_laevigata	RLG00000012838
rosa_multiflora	Rmu_sc0014685.1_g000009
rosa_roxburghii	Rroxscaffold_7G00185680
rosa_rugosa	Rorug06G0152400
rosa_samantha	Rh6AG264900 Rh6BG267800 Rh6CG266800 Rh6DG260100
rosa_wichuraiana	Rw6G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	75, 88, 195, 208
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	39, 220, 248
AfiI	CCNNNNNNNGG	2 cut(s)	118, 278
AflII	CTTAAG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	141
AleI	CACNNNNGTG	1 cut(s)	214
AluBI	AGCT	3 cut(s)	11, 65, 260
AluI	AGCT	3 cut(s)	11, 65, 260
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	4 cut(s)	75, 88, 195, 208
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	62, 98
AseI	ATTAAT	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	80, 200
BbvI	GCAGC	2 cut(s)	74, 110
BccI	CCATC	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	12, 35
BfmI	CTRYAG	1 cut(s)	310
BfrI	CTTAAG	1 cut(s)	154
BisI	GCNGC	2 cut(s)	63, 99
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	64, 100
BmcAI	AGTACT	1 cut(s)	39
BmiI	GGNNCC	3 cut(s)	82, 130, 202
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 278
Bse1I	ACTGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	118, 278
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	74, 110
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	118, 278
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	80, 200
Bsp1720I	GCTNAGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	82, 130, 202
BspPI	GGATC	4 cut(s)	75, 88, 195, 208
BspTI	CTTAAG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	2 cut(s)	80, 200
BstAFI	CTTAAG	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	245
BstKTI	GATC	2 cut(s)	83, 203
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	80, 200
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	74, 110
BstX2I	RGATCY	2 cut(s)	80, 200
BstYI	RGATCY	2 cut(s)	80, 200
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	38, 219, 247
CviJI	RGCY	4 cut(s)	5, 11, 65, 260
CviKI_1	RGCY	4 cut(s)	5, 11, 65, 260
CviQI	GTAC	3 cut(s)	38, 219, 247
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	82, 202
DpnII	GATC	2 cut(s)	80, 200
EaeI	YGGCCR	1 cut(s)	3
FaiI	YATR	4 cut(s)	69, 74, 126, 327
FaqI	GGGAC	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	63, 99
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	63, 99
FspBI	CTAG	2 cut(s)	12, 35
GluI	GCNGC	2 cut(s)	63, 99
HaeIII	GGCC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	147, 272
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	62, 234, 243, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	80, 200
LpnPI	CCDG	4 cut(s)	19, 62, 97, 285
Lsp1109I	GCAGC	2 cut(s)	74, 110
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	12, 35
MaeII	ACGT	1 cut(s)	215
MalI	GATC	2 cut(s)	82, 202
MboI	GATC	2 cut(s)	80, 200
MflI	RGATCY	2 cut(s)	80, 200
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	30, 142, 157, 230
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	53, 155
MslI	CAYNNNNRTG	1 cut(s)	214
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	154
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	2 cut(s)	80, 200
NlaIV	GGNNCC	3 cut(s)	82, 130, 202
OliI	CACNNNNGTG	1 cut(s)	214
PctI	GAATGC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	64, 100
PshBI	ATTAAT	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	82, 130, 202
PsuI	RGATCY	2 cut(s)	80, 200
RsaI	GTAC	3 cut(s)	39, 220, 248
RsaNI	GTAC	3 cut(s)	38, 219, 247
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	53, 155
SatI	GCNGC	2 cut(s)	63, 99
Sau3AI	GATC	2 cut(s)	80, 200
ScaI	AGTACT	1 cut(s)	39
SetI	ASST	6 cut(s)	13, 22, 67, 218, 262, 332
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	90, 154
SmoI	CTYRAG	2 cut(s)	90, 154
Sse9I	AATT	1 cut(s)	26
SspMI	CTAG	2 cut(s)	12, 35
TaiI	ACGT	1 cut(s)	218
TasI	AATT	1 cut(s)	26
TatI	WGTACW	3 cut(s)	37, 218, 246
Tru1I	TTAA	2 cut(s)	53, 155
Tru9I	TTAA	2 cut(s)	53, 155
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	62, 98
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	154
VspI	ATTAAT	1 cut(s)	53
XspI	CTAG	2 cut(s)	12, 35
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.