Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015267

Physical Location & Seq

Genomic Coordinates Reverse (-)

15389260 .. 15390004

Gene Structure 745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCAGAGCTAGAACACCTCCTAAACTACTCTTAGCACTGCTCTACATATTAATCTGTGCAGCTTATGTTATACAAGGATCCAGAACTGAAGTAGCAGCACTCCAAAACCATCAAAGGGTTCATGGTTCCTCTCCTTCAAAAGGAGAGCAGCTTAAGCAGGGTAGTGAGAAAAATAAGAACTATGCAAGGAGACTGATGATTGGATCCACAGCACCAACCTGTACTTATAATGAATGCAGAGGATGCAAGTACAAGTGCAGAGCTGAGCAAGTCCCAGTAGAAGGAAATGACCCTATCAATAGTGCTTACCACTACAGATGTGTGTGTCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stomagen

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

9.53

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stomagen	PF16851	63 - 111	2.6e-33	Stomagen

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12970
fragaria_vesca	FvH4_2g17950
malus_domestica	MD05G1163400.v1.1 MD10G1153200.v1.1
prunus_persica	Prupe.8G192000_v2.0.a1
pyrus_communis	pycom05g15280
rosa_chinensis	RchiOBHm_Chr6g0283181
rosa_laevigata	RLG00000012838
rosa_multiflora	Rmu_sc0014685.1_g000009
rosa_roxburghii	Rroxscaffold_7G00185680
rosa_rugosa	Rorug06G0152400
rosa_samantha	Rh6AG264900 Rh6BG267800 Rh6CG266800 Rh6DG260100
rosa_wichuraiana	Rw6G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AclWI	GGATC	4 cut(s)	75, 88, 201, 214
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	226, 254
AfiI	CCNNNNNNNGG	3 cut(s)	118, 143, 284
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	141
AluBI	AGCT	4 cut(s)	11, 65, 154, 266
AluI	AGCT	4 cut(s)	11, 65, 154, 266
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	4 cut(s)	75, 88, 201, 214
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	62, 98, 151
AseI	ATTAAT	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	80, 206
BbvI	GCAGC	3 cut(s)	74, 110, 163
BccI	CCATC	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	316
BfrI	CTTAAG	1 cut(s)	155
BisI	GCNGC	3 cut(s)	63, 99, 152
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	3 cut(s)	64, 100, 153
BmiI	GGNNCC	3 cut(s)	82, 130, 208
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 143, 284
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	3 cut(s)	118, 143, 284
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	74, 110, 163
BsgI	GTGCAG	2 cut(s)	81, 280
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	118, 143, 284
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	80, 206
Bsp1720I	GCTNAGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	82, 130, 208
BspPI	GGATC	4 cut(s)	75, 88, 201, 214
BspTI	CTTAAG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	80, 206
BstAFI	CTTAAG	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	34, 267
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	83, 209
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	80, 206
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 246
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	74, 110, 163
BstX2I	RGATCY	2 cut(s)	80, 206
BstYI	RGATCY	2 cut(s)	80, 206
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	225, 253
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	5, 11, 65, 154, 266
CviKI_1	RGCY	5 cut(s)	5, 11, 65, 154, 266
CviQI	GTAC	2 cut(s)	225, 253
DdeI	CTNAG	2 cut(s)	34, 267
DpnI	GATC	2 cut(s)	82, 208
DpnII	GATC	2 cut(s)	80, 206
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	128
FaiI	YATR	7 cut(s)	50, 69, 74, 126, 186, 231, 333
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	63, 99, 152
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	63, 99, 152
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	3 cut(s)	63, 99, 152
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	147, 278
HpyCH4V	TGCA	5 cut(s)	62, 188, 240, 249, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 246
HpyF3I	CTNAG	2 cut(s)	34, 267
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	80, 206
LpnPI	CCDG	5 cut(s)	19, 97, 146, 235, 291
Lsp1109I	GCAGC	3 cut(s)	74, 110, 163
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	12
MalI	GATC	2 cut(s)	82, 208
MboI	GATC	2 cut(s)	80, 206
MflI	RGATCY	2 cut(s)	80, 206
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	30, 142, 236
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	53, 156
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	157, 246
NdeII	GATC	2 cut(s)	80, 206
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	3 cut(s)	82, 130, 208
PctI	GAATGC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	64, 100, 153
PshBI	ATTAAT	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	82, 130, 208
PsuI	RGATCY	2 cut(s)	80, 206
RsaI	GTAC	2 cut(s)	226, 254
RsaNI	GTAC	2 cut(s)	225, 253
SaqAI	TTAA	2 cut(s)	53, 156
SatI	GCNGC	3 cut(s)	63, 99, 152
Sau3AI	GATC	2 cut(s)	80, 206
SetI	ASST	7 cut(s)	13, 22, 67, 156, 224, 268, 338
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SspMI	CTAG	1 cut(s)	12
TatI	WGTACW	2 cut(s)	224, 252
Tru1I	TTAA	2 cut(s)	53, 156
Tru9I	TTAA	2 cut(s)	53, 156
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	3 cut(s)	62, 98, 151
TspDTI	ATGAA	2 cut(s)	113, 249
TspRI	CASTG	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	141
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.