Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015267

Physical Location & Seq

Genomic Coordinates Reverse (-)

29235885 .. 29237165

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1163400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCAAATCCACAAGACTTGAACTACTCTTACCATTCTTCACAACACTTTTACTCTTTGCAGCTTATGTTGTACAAGGGTCCAGAACTCAAGTAGCAGAACTTCCACACAATCAAAGGGTCAATGATTTCTCTACATCACAAGAAGAAAAATCAAATCAGAGAAGCAAGGAAAGGATGAATTATGCAAGGAGACTGATGATTGGATCCACAGCACCAACATGCACTTACAACGAATGCAGAGGGTGCAAGTACAAGTGCAGAGCTGAGCAAGTCCCTGTGGAGGGAAATGACCCCATCCATAGTGCATACCACTACAGATGTGTTTGTCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stomagen

Protein Analysis

113

Amino Acids

12.95

Weight (kDa)

9.17

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stomagen	PF16851	63 - 111	1.7e-32	Stomagen

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12970
fragaria_vesca	FvH4_2g17950
malus_domestica	MD05G1163400.v1.1 MD10G1153200.v1.1
prunus_persica	Prupe.8G192000_v2.0.a1
pyrus_communis	pycom05g15280
rosa_chinensis	RchiOBHm_Chr6g0283181
rosa_laevigata	RLG00000012838
rosa_multiflora	Rmu_sc0014685.1_g000009
rosa_roxburghii	Rroxscaffold_7G00185680
rosa_rugosa	Rorug06G0152400
rosa_samantha	Rh6AG264900 Rh6BG267800 Rh6CG266800 Rh6DG260100
rosa_wichuraiana	Rw6G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	201, 214
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	75, 254
AfiI	CCNNNNNNNGG	2 cut(s)	283, 284
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	2 cut(s)	65, 266
AluI	AGCT	2 cut(s)	65, 266
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	2 cut(s)	201, 214
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	206
BarI	GAAGNNNNNNTAC	2 cut(s)	87, 119
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	316
BisI	GCNGC	1 cut(s)	63
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	82, 208
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 284
BseGI	GGATG	2 cut(s)	183, 297
BseLI	CCNNNNNNNGG	2 cut(s)	283, 284
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	283, 284
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	206
Bsp1720I	GCTNAGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	82, 208
BspPI	GGATC	2 cut(s)	201, 214
BsrGI	TGTACA	1 cut(s)	73
BssMI	GATC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstAUI	TGTACA	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	183, 297
BstKTI	GATC	1 cut(s)	209
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	183, 297
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	74, 253
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	3 cut(s)	5, 65, 266
CviKI_1	RGCY	3 cut(s)	5, 65, 266
CviQI	GTAC	2 cut(s)	74, 253
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	81
FaeI	CATG	1 cut(s)	225
FaiI	YATR	6 cut(s)	69, 186, 223, 303, 310, 333
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	190, 284
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	84
HpyCH4V	TGCA	7 cut(s)	62, 188, 225, 240, 249, 261, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	206
LpnPI	CCDG	2 cut(s)	97, 291
Lsp1109I	GCAGC	1 cut(s)	74
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	31, 158
MflI	RGATCY	1 cut(s)	206
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	236, 277
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	220
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	2 cut(s)	82, 208
NspI	RCATGY	1 cut(s)	225
PctI	GAATGC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	82, 208
PspPI	GGNCC	1 cut(s)	81
PsrI	GAACNNNNNNTAC	2 cut(s)	15, 47
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	75, 254
RsaNI	GTAC	2 cut(s)	74, 253
RseI	CAYNNNNRTG	1 cut(s)	220
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	81
SetI	ASST	3 cut(s)	67, 268, 338
SfcI	CTRYAG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	181
TasI	AATT	1 cut(s)	181
TatI	WGTACW	2 cut(s)	73, 252
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	81
XceI	RCATGY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.