Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014685.1

Orthogroup ID

OG0015267

Physical Location & Seq

Genomic Coordinates Reverse (-)

35720 .. 39239

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014685.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggccagagctagaatacctcctaaattactcttaggactgcttttcacattaatctttgcagcttatgttatacagggatccagaactcaagtagcagcactccaaaaccatcaaagggtctatggttcctctccttcaaaaggagaacaacttaagcagggtagtgaggaaaagaagaactacgcaaggagactgatgattggatccacagcaccaacgtgtacttataatgaatgcagaggatgcaagtacaagtgcagagctgagcaagtcccagtagaaggaaatgacccaatcaatagtgcttaccactacagatgtagtaaaaccccaggcccagaacaggcccaccattggactacggcccaaggggcccaaaccttgatcccaacccaatacgacttgggcacagtcagctcagccaccaccgttacgtctcccagaccggcgtgccggcccctcattcagaccctgcctgcagtcgacccaccatctccggcaaagatccggcagatcgtccctgccatgaccacaacaccacgagattctgatacaaggaactatcatctccagcagaaacccagcaccacgcctctcaccgacgtcaactgccacatgaaaggattggatctacccattgacccaagctccaaatcggatgcaaacgccggccactcacccggtcacctccttcagccacgaaccctccttctgtgcctccgtcattttcaaccgaaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stomagen

Protein Analysis

248

Amino Acids

27.26

Weight (kDa)

9.55

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12970
fragaria_vesca	FvH4_2g17950
malus_domestica	MD05G1163400.v1.1 MD10G1153200.v1.1
prunus_persica	Prupe.8G192000_v2.0.a1
pyrus_communis	pycom05g15280
rosa_chinensis	RchiOBHm_Chr6g0283181
rosa_laevigata	RLG00000012838
rosa_multiflora	Rmu_sc0014685.1_g000009
rosa_roxburghii	Rroxscaffold_7G00185680
rosa_rugosa	Rorug06G0152400
rosa_samantha	Rh6AG264900 Rh6BG267800 Rh6CG266800 Rh6DG260100
rosa_wichuraiana	Rw6G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AatII	GACGTC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	486
AclWI	GGATC	7 cut(s)	75, 88, 201, 214, 382, 502, 639
AcoI	YGGCCR	2 cut(s)	3, 673
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	2 cut(s)	226, 254
AfiI	CCNNNNNNNGG	5 cut(s)	118, 143, 284, 346, 357
AflII	CTTAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	141, 734
AjnI	CCWGG	1 cut(s)	334
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	11, 65, 266, 420, 651
AluI	AGCT	5 cut(s)	11, 65, 266, 420, 651
Alw26I	GTCTC	2 cut(s)	187, 444
AlwI	GGATC	7 cut(s)	75, 88, 201, 214, 382, 502, 639
AlwNI	CAGNNNCTG	1 cut(s)	475
AoxI	GGCC	7 cut(s)	3, 337, 348, 366, 375, 458, 673
ApaI	GGGCCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	62, 98
AseI	ATTAAT	1 cut(s)	53
AspS9I	GGNCC	6 cut(s)	338, 349, 367, 375, 376, 459
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	3 cut(s)	592, 672, 680
BaeGI	GKGCMC	2 cut(s)	379, 413
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	80, 206
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	543
BbvI	GCAGC	2 cut(s)	74, 110
BccI	CCATC	2 cut(s)	120, 502
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	2 cut(s)	187, 444
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	2 cut(s)	316, 480
BfrI	CTTAAG	1 cut(s)	155
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	63, 99
BlpI	GCTNAGC	2 cut(s)	267, 421
BlsI	GCNGC	2 cut(s)	64, 100
Bme1390I	CCNGG	2 cut(s)	336, 684
BmgT120I	GGNCC	6 cut(s)	338, 349, 367, 375, 376, 459
BmiI	GGNNCC	6 cut(s)	82, 130, 208, 376, 377, 461
BmrFI	CCNGG	2 cut(s)	336, 684
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	236, 652
BmuI	ACTGGG	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	557
Bpu1102I	GCTNAGC	2 cut(s)	267, 421
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	334, 370
BsaXI	ACNNNNNCTCC	4 cut(s)	635, 665, 693, 723
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 143, 284, 346, 357
Bse118I	RCCGGY	3 cut(s)	448, 456, 671
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	334, 370
BseGI	GGATG	2 cut(s)	251, 667
BseLI	CCNNNNNNNGG	5 cut(s)	118, 143, 284, 346, 357
BseMII	CTCAG	2 cut(s)	258, 435
BseNI	ACTGG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	379, 413
BseXI	GCAGC	2 cut(s)	74, 110
BseYI	CCCAGC	1 cut(s)	584
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	7 cut(s)	5, 339, 350, 368, 377, 460, 675
BsiSI	CCGG	6 cut(s)	449, 457, 500, 511, 672, 684
BslFI	GGGAC	2 cut(s)	260, 506
BslI	CCNNNNNNNGG	5 cut(s)	118, 143, 284, 346, 357
BsmAI	GTCTC	2 cut(s)	187, 444
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	2 cut(s)	260, 506
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	7 cut(s)	5, 339, 350, 368, 377, 460, 675
Bsp120I	GGGCCC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	379, 413
Bsp143I	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
Bsp1720I	GCTNAGC	2 cut(s)	267, 421
BspANI	GGCC	7 cut(s)	5, 339, 350, 368, 377, 460, 675
BspCNI	CTCAG	2 cut(s)	259, 434
BspLI	GGNNCC	6 cut(s)	82, 130, 208, 376, 377, 461
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	7 cut(s)	75, 88, 201, 214, 382, 502, 639
BspTI	CTTAAG	1 cut(s)	155
BsrFI	RCCGGY	3 cut(s)	448, 456, 671
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	3 cut(s)	448, 456, 671
BssECI	CCNNGG	2 cut(s)	334, 370
BssMI	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	415, 433
BstACI	GRCGYC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstC8I	GCNNGC	4 cut(s)	454, 458, 480, 673
BstDEI	CTNAG	3 cut(s)	34, 267, 421
BstEII	GGTNACC	1 cut(s)	686
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	251, 667
BstKTI	GATC	6 cut(s)	83, 209, 390, 510, 519, 634
BstMAI	GTCTC	2 cut(s)	187, 444
BstMBI	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 374, 417
BstNI	CCWGG	1 cut(s)	336
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	334, 682
BstSFI	CTRYAG	2 cut(s)	316, 480
BstSLI	GKGCMC	2 cut(s)	379, 413
BstV1I	GCAGC	2 cut(s)	74, 110
BstX2I	RGATCY	4 cut(s)	80, 206, 507, 631
BstYI	RGATCY	4 cut(s)	80, 206, 507, 631
BsuRI	GGCC	7 cut(s)	5, 339, 350, 368, 377, 460, 675
BtsCI	GGATG	2 cut(s)	251, 667
Cac8I	GCNNGC	4 cut(s)	454, 458, 480, 673
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr10I	RCCGGY	3 cut(s)	448, 456, 671
Cfr13I	GGNCC	6 cut(s)	338, 349, 367, 375, 376, 459
Csp6I	GTAC	2 cut(s)	225, 253
CviAII	CATG	2 cut(s)	529, 619
CviQI	GTAC	2 cut(s)	225, 253
DdeI	CTNAG	3 cut(s)	34, 267, 421
DpnI	GATC	6 cut(s)	82, 208, 389, 509, 518, 633
DpnII	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
EaeI	YGGCCR	2 cut(s)	3, 673
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	686
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	2 cut(s)	532, 622
FaiI	YATR	7 cut(s)	69, 74, 126, 231, 530, 620, 745
FaqI	GGGAC	2 cut(s)	260, 506
FatI	CATG	2 cut(s)	528, 618
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	63, 99
FokI	GGATG	2 cut(s)	258, 674
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	2 cut(s)	63, 99
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	63, 99
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	7 cut(s)	5, 339, 350, 368, 377, 460, 675
HapII	CCGG	6 cut(s)	449, 457, 500, 511, 672, 684
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	532, 622
HincII	GTYRAC	2 cut(s)	487, 610
HindII	GTYRAC	2 cut(s)	487, 610
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	6 cut(s)	449, 457, 500, 511, 672, 684
HphI	GGTGA	3 cut(s)	592, 672, 680
Hpy166II	GTNNAC	3 cut(s)	225, 487, 610
Hpy188I	TCNGA	3 cut(s)	471, 553, 661
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	3 cut(s)	225, 487, 610
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	4 cut(s)	147, 278, 704, 722
HpyCH4III	ACNGT	2 cut(s)	415, 433
HpyCH4IV	ACGT	3 cut(s)	221, 437, 606
HpyCH4V	TGCA	6 cut(s)	62, 240, 249, 261, 482, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 374, 417
HpyF3I	CTNAG	3 cut(s)	34, 267, 421
HpySE526I	ACGT	3 cut(s)	221, 437, 606
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	2 cut(s)	532, 622
KroI	GCCGGC	2 cut(s)	456, 671
KroNI	GCCGGC	2 cut(s)	458, 673
Kzo9I	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	74, 110
LweI	GCATC	2 cut(s)	236, 652
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	3 cut(s)	221, 437, 606
MaeIII	GTNAC	2 cut(s)	433, 686
MalI	GATC	6 cut(s)	82, 208, 389, 509, 518, 633
MboI	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
MboII	GAAGA	1 cut(s)	190
MflI	RGATCY	4 cut(s)	80, 206, 507, 631
MhlI	GDGCHC	2 cut(s)	379, 413
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	9 cut(s)	30, 142, 163, 236, 473, 606, 701, 719, 731
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	456, 671
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	53, 156
MslI	CAYNNNNRTG	1 cut(s)	220
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	6 cut(s)	449, 457, 500, 511, 672, 684
MspR9I	CCNGG	2 cut(s)	336, 684
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	246, 374, 417
NaeI	GCCGGC	2 cut(s)	458, 673
NciI	CCSGG	1 cut(s)	684
NdeII	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
NgoMIV	GCCGGC	2 cut(s)	456, 671
NlaIII	CATG	2 cut(s)	532, 622
NlaIV	GGNNCC	6 cut(s)	82, 130, 208, 376, 377, 461
NmuCI	GTSAC	1 cut(s)	686
OliI	CACNNNNGTG	1 cut(s)	220
PctI	GAATGC	1 cut(s)	242
PdiI	GCCGGC	2 cut(s)	458, 673
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	64, 100
PshBI	ATTAAT	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	334
PspEI	GGTNACC	1 cut(s)	686
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	6 cut(s)	82, 130, 208, 376, 377, 461
PspOMI	GGGCCC	1 cut(s)	375
PspPI	GGNCC	6 cut(s)	338, 349, 367, 375, 376, 459
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	4 cut(s)	80, 206, 507, 631
RsaI	GTAC	2 cut(s)	226, 254
RsaNI	GTAC	2 cut(s)	225, 253
RseI	CAYNNNNRTG	1 cut(s)	220
SalI	GTCGAC	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	53, 156
SatI	GCNGC	2 cut(s)	63, 99
Sau3AI	GATC	6 cut(s)	80, 206, 387, 507, 516, 631
Sau96I	GGNCC	6 cut(s)	338, 349, 367, 375, 376, 459
ScrFI	CCNGG	2 cut(s)	336, 684
SduI	GDGCHC	2 cut(s)	379, 413
SfaNI	GCATC	2 cut(s)	236, 652
SfcI	CTRYAG	2 cut(s)	316, 480
SfiI	GGCCNNNNNGGCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	90, 155
SmoI	CTYRAG	2 cut(s)	90, 155
Sse9I	AATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	334, 682
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	415, 433
TaiI	ACGT	3 cut(s)	224, 440, 609
TaqI	TCGA	1 cut(s)	486
TasI	AATT	1 cut(s)	26
TatI	WGTACW	2 cut(s)	224, 252
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	53, 156
Tru9I	TTAA	2 cut(s)	53, 156
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	2 cut(s)	62, 98
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	2 cut(s)	249, 635
TspGWI	ACGGA	1 cut(s)	713
Vha464I	CTTAAG	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	12
ZraI	GACGTC	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.