Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010975

Physical Location & Seq

Genomic Coordinates Reverse (-)

7598004 .. 7599447

Gene Structure 1444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGCAACCACCTCTTACCACCGGAGAACAAGATCCCGACTCTCAACTTCGACCATCTAGAGATTTTCTCAGCCCTTGGACGTGGATCTAAAGGAGTTGTGTTCTTAGTAAAAGCCGATAACAAATGGCTTGCTTTAAAAGTCATACTAAGAGAATCAATCGAGTCAAAGAAGGCCAAAGATGAGTACAAACGCATAAGTTTCGAACAAGGAGTGTTGTCTCGATTCGACCATCCTCTGTTTCCACGTCTTCATGGTGTTATATCCACCGATAAAGTTATCGGTTACGCGATTGATTACTGTCCTGGAAGAGATCTCAACTCTTTAAGGAAAAAACAGTCGGAAGAAATGTTTTCCGATGAGATCATTAGATTTTACGCGGCGGAGCTTGTGATTGCACTTGAGTATTTGCATAATCAAGGAATTGTGTACAGAGATTTGAAGCCTGATAATGTGATGATTCAAGAGAATGGTCATCTGATGCTTGTTGATTTTGATCTTTCGACGAATCTACCTCCTAGAACTCCACAATCTTCTTTTTCGTCGTCACCGAGACTTTCGACGGCGACGAAGAAAGAAAGGTCTATCTTCGCATTTTCCGGTTTATGTAACTCCGGAATCTCCCCGGACGACTCGGTTTCGAGATCCTCCGAGTCGGAGTTTTCAGGAGAGAAGTCGAACTCGTTTGTTGGAACAGAGGAATATGTTGCGCCGGAGGTAATCACCGGAAGTGGCCATGACTTCGCCGTGGATTGGTGGTCGTTGGGAGTGGTTTTGTATGAGATGTTGTACGGAGCGACGCCGTTTAGGGGGTCCAACCGTAAAGAGACTTTTTTAAAGATATTAACTGAACCGCCGAGTTTGGTCGGAGAAACGACATCGTTAAGAGACTTGGTAAGAAAACTGTTGGAGAAAGATCCTAGCCGTAGGATTAATGTTGAAGGAATCAAGGGACATGATTTCTTTAAAGGGTTGGATTGGGATTTGGTGCTTAAGGTATCACGACCACCGTATATTCCGGCGCCGGAAAATTATGAGATTTCGAAAATCGACGTGGAGAAATTCGTCCATGAAATATTTACTAAATGTGAACATAATGGTAATTTTATTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

372

Amino Acids

42.16

Weight (kDa)

5.98

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 182	3.5e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 171	1.8e-14	Protein tyrosine and serine/threonine kinase
YrbL-PhoP_reg	PF10707	24 - 158	1.6e-06	PhoP regulatory network protein YrbL
Pkinase	PF00069	223 - 322	4.3e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	225 - 316	2.3e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25250 AT4G13000
fragaria_vesca	FvH4_2g18040
malus_domestica	MD05G1164900.v1.1 MD10G1154200.v1.1
prunus_persica	Prupe.8G193100_v2.0.a1
pyrus_communis	pycom05g15350 pycom10g13330
rosa_chinensis	RchiOBHm_Chr6g0283431
rosa_laevigata	RLG00000012827
rosa_multiflora	Rmu_sc0003166.1_g000017 Rmu_sc0004959.1_g000020 Rmu_sc0039373.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185540
rosa_rugosa	Rorug06G0154100
rosa_samantha	Rh6AG266400 Rh6BG268900 Rh6CG268800 Rh6DG262200
rosa_wichuraiana	Rw6G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1021
AccII	CGCG	2 cut(s)	290, 380
AccIII	TCCGGA	1 cut(s)	614
AciI	CCGC	3 cut(s)	380, 383, 854
AclWI	GGATC	4 cut(s)	28, 94, 639, 911
AcoI	YGGCCR	1 cut(s)	733
AcsI	RAATTY	1 cut(s)	1061
AcyI	GRCGYC	2 cut(s)	800, 1022
AfaI	GTAC	3 cut(s)	188, 431, 791
AfiI	CCNNNNNNNGG	2 cut(s)	753, 809
AflII	CTTAAG	1 cut(s)	992
AgsI	TTSAA	3 cut(s)	442, 464, 941
AjiI	CACGTC	3 cut(s)	83, 248, 1054
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	4 cut(s)	225, 547, 821, 882
AlwI	GGATC	4 cut(s)	28, 94, 639, 911
Aor13HI	TCCGGA	1 cut(s)	614
AoxI	GGCC	2 cut(s)	174, 733
ApoI	RAATTY	1 cut(s)	1061
AseI	ATTAAT	1 cut(s)	933
AspLEI	GCGC	2 cut(s)	712, 1024
AspS9I	GGNCC	1 cut(s)	813
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	540, 715
AsuII	TTCGAA	2 cut(s)	204, 1043
AvaII	GGWCC	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	1021
BbsI	GAAGAC	1 cut(s)	242
BccI	CCATC	2 cut(s)	63, 240
BceAI	ACGGC	4 cut(s)	579, 731, 787, 909
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	4 cut(s)	225, 547, 821, 882
BfaI	CTAG	3 cut(s)	59, 519, 921
BfoI	RGCGCY	1 cut(s)	1025
BfrI	CTTAAG	1 cut(s)	992
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	306, 626
Bme18I	GGWCC	1 cut(s)	813
BmgBI	CACGTC	3 cut(s)	83, 248, 1054
BmgT120I	GGNCC	1 cut(s)	813
BmiI	GGNNCC	2 cut(s)	814, 1023
BmrFI	CCNGG	2 cut(s)	306, 626
BmsI	GCATC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu14I	TTCGAA	2 cut(s)	204, 1043
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	2 cut(s)	800, 1022
BsaJI	CCNNGG	3 cut(s)	76, 624, 747
BsaWI	WCCGGW	4 cut(s)	22, 599, 614, 725
Bsc4I	CCNNNNNNNGG	2 cut(s)	753, 809
Bse8I	GATNNNNATC	1 cut(s)	495
BseAI	TCCGGA	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	76, 624, 747
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	753, 809
BseMII	CTCAG	1 cut(s)	84
Bsh1236I	CGCG	2 cut(s)	290, 380
BshFI	GGCC	2 cut(s)	176, 735
BshNI	GGYRCC	1 cut(s)	1021
BsiSI	CCGG	8 cut(s)	23, 600, 615, 626, 713, 726, 1019, 1025
BslFI	GGGAC	1 cut(s)	966
BslI	CCNNNNNNNGG	2 cut(s)	753, 809
BsmAI	GTCTC	4 cut(s)	225, 547, 821, 882
BsmFI	GGGAC	1 cut(s)	966
BsnI	GGCC	2 cut(s)	176, 735
Bsp119I	TTCGAA	2 cut(s)	204, 1043
Bsp13I	TCCGGA	1 cut(s)	614
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
BspACI	CCGC	3 cut(s)	380, 383, 854
BspANI	GGCC	2 cut(s)	176, 735
BspCNI	CTCAG	1 cut(s)	83
BspEI	TCCGGA	1 cut(s)	614
BspFNI	CGCG	2 cut(s)	290, 380
BspLI	GGNNCC	2 cut(s)	814, 1023
BspPI	GGATC	4 cut(s)	28, 94, 639, 911
BspT104I	TTCGAA	2 cut(s)	204, 1043
BspT107I	GGYRCC	1 cut(s)	1021
BspTI	CTTAAG	1 cut(s)	992
BsrGI	TGTACA	1 cut(s)	429
BssECI	CCNNGG	3 cut(s)	76, 624, 747
BssMI	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
BssNI	GRCGYC	2 cut(s)	800, 1022
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	5 cut(s)	302, 339, 821, 906, 1011
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	2 cut(s)	800, 1022
BstAFI	CTTAAG	1 cut(s)	992
BstAUI	TGTACA	1 cut(s)	429
BstBI	TTCGAA	2 cut(s)	204, 1043
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	70, 106, 149
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	2 cut(s)	290, 380
BstH2I	RGCGCY	1 cut(s)	1025
BstHHI	GCGC	2 cut(s)	712, 1024
BstKTI	GATC	7 cut(s)	36, 89, 316, 366, 499, 647, 919
BstMAI	GTCTC	4 cut(s)	225, 547, 821, 882
BstMBI	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	304, 624
BstUI	CGCG	2 cut(s)	290, 380
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	5 cut(s)	33, 86, 313, 644, 916
BstYI	RGATCY	5 cut(s)	33, 86, 313, 644, 916
BsuRI	GGCC	2 cut(s)	176, 735
BtgI	CCRYGG	1 cut(s)	747
BtrI	CACGTC	3 cut(s)	83, 248, 1054
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	712, 1024
Cfr13I	GGNCC	1 cut(s)	813
CseI	GACGC	1 cut(s)	808
Csp6I	GTAC	3 cut(s)	187, 430, 790
CviAII	CATG	4 cut(s)	254, 737, 956, 1070
CviJI	RGCY	8 cut(s)	74, 116, 130, 176, 388, 445, 735, 924
CviKI_1	RGCY	8 cut(s)	74, 116, 130, 176, 388, 445, 735, 924
CviQI	GTAC	3 cut(s)	187, 430, 790
DdeI	CTNAG	3 cut(s)	70, 106, 149
DinI	GGCGCC	1 cut(s)	1023
DpnI	GATC	7 cut(s)	35, 88, 315, 365, 498, 646, 918
DpnII	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
DraI	TTTAAA	3 cut(s)	138, 837, 967
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	76
EgeI	GGCGCC	1 cut(s)	1023
EheI	GGCGCC	1 cut(s)	1023
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	4 cut(s)	257, 740, 959, 1073
FaqI	GGGAC	1 cut(s)	966
FatI	CATG	4 cut(s)	253, 736, 955, 1069
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	59, 519, 921
GlaI	GCGC	2 cut(s)	711, 1023
GluI	GCNGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	1025
HaeIII	GGCC	2 cut(s)	176, 735
HapII	CCGG	8 cut(s)	23, 600, 615, 626, 713, 726, 1019, 1025
HgaI	GACGC	1 cut(s)	808
HhaI	GCGC	2 cut(s)	712, 1024
Hin1I	GRCGYC	2 cut(s)	800, 1022
Hin1II	CATG	4 cut(s)	257, 740, 959, 1073
Hin6I	GCGC	2 cut(s)	710, 1022
HinP1I	GCGC	2 cut(s)	710, 1022
HpaII	CCGG	8 cut(s)	23, 600, 615, 626, 713, 726, 1019, 1025
HphI	GGTGA	2 cut(s)	540, 715
Hpy166II	GTNNAC	2 cut(s)	430, 1091
Hpy188I	TCNGA	6 cut(s)	343, 358, 480, 652, 658, 869
Hpy188III	TCNNGA	8 cut(s)	37, 59, 222, 464, 615, 642, 666, 1002
Hpy8I	GTNNAC	2 cut(s)	430, 1091
Hpy99I	CGWCG	6 cut(s)	508, 547, 565, 571, 802, 1055
HpyAV	CCTTC	2 cut(s)	166, 935
HpyCH4III	ACNGT	5 cut(s)	302, 339, 821, 906, 1011
HpyCH4IV	ACGT	3 cut(s)	82, 247, 1053
HpyCH4V	TGCA	2 cut(s)	398, 412
HpyF3I	CTNAG	3 cut(s)	70, 106, 149
HpySE526I	ACGT	3 cut(s)	82, 247, 1053
Hsp92I	GRCGYC	2 cut(s)	800, 1022
Hsp92II	CATG	4 cut(s)	257, 740, 959, 1073
HspAI	GCGC	2 cut(s)	710, 1022
KasI	GGCGCC	1 cut(s)	1021
Kpn2I	TCCGGA	1 cut(s)	614
Kzo9I	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
LmnI	GCTCC	2 cut(s)	385, 794
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	3 cut(s)	59, 519, 921
MaeII	ACGT	3 cut(s)	82, 247, 1053
MaeIII	GTNAC	3 cut(s)	284, 546, 608
MalI	GATC	7 cut(s)	35, 88, 315, 365, 498, 646, 918
MboI	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
MboII	GAAGA	6 cut(s)	242, 321, 356, 525, 580, 583
MflI	RGATCY	5 cut(s)	33, 86, 313, 644, 916
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	4 cut(s)	423, 1030, 1061, 1102
MluNI	TGGCCA	1 cut(s)	735
Mly113I	GGCGCC	1 cut(s)	1022
MlyI	GAGTC	4 cut(s)	34, 173, 626, 662
MmeI	TCCRAC	7 cut(s)	321, 636, 670, 840, 847, 888, 954
MnlI	CCTC	6 cut(s)	23, 246, 525, 658, 691, 709
Mox20I	TGGCCA	1 cut(s)	735
MroI	TCCGGA	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	8 cut(s)	137, 326, 836, 845, 884, 933, 966, 993
Msp20I	TGGCCA	1 cut(s)	735
MspCI	CTTAAG	1 cut(s)	992
MspI	CCGG	8 cut(s)	23, 600, 615, 626, 713, 726, 1019, 1025
MspR9I	CCNGG	2 cut(s)	306, 626
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	2 cut(s)	290, 380
NarI	GGCGCC	1 cut(s)	1022
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
NlaIII	CATG	4 cut(s)	257, 740, 959, 1073
NlaIV	GGNNCC	2 cut(s)	814, 1023
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	1 cut(s)	546
NspV	TTCGAA	2 cut(s)	204, 1043
PcsI	WCGNNNNNNNCGW	2 cut(s)	548, 566
PfeI	GAWTC	6 cut(s)	155, 225, 460, 508, 618, 945
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	4 cut(s)	34, 172, 626, 661
PluTI	GGCGCC	1 cut(s)	1025
PpsI	GAGTC	4 cut(s)	34, 172, 626, 661
PshBI	ATTAAT	1 cut(s)	933
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	814, 1023
PspPI	GGNCC	1 cut(s)	813
PsuI	RGATCY	5 cut(s)	33, 86, 313, 644, 916
RsaI	GTAC	3 cut(s)	188, 431, 791
RsaNI	GTAC	3 cut(s)	187, 430, 790
SaqAI	TTAA	8 cut(s)	137, 326, 836, 845, 884, 933, 966, 993
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	7 cut(s)	33, 86, 313, 363, 496, 644, 916
Sau96I	GGNCC	1 cut(s)	813
SchI	GAGTC	4 cut(s)	34, 173, 626, 662
ScrFI	CCNGG	2 cut(s)	306, 626
SetI	ASST	9 cut(s)	15, 85, 250, 390, 517, 584, 720, 999, 1056
SfaNI	GCATC	1 cut(s)	471
SfoI	GGCGCC	1 cut(s)	1023
SfuI	TTCGAA	2 cut(s)	204, 1043
SinI	GGWCC	1 cut(s)	813
SmlI	CTYRAG	2 cut(s)	401, 992
SmoI	CTYRAG	2 cut(s)	401, 992
Sse9I	AATT	4 cut(s)	423, 1030, 1061, 1102
SsiI	CCGC	3 cut(s)	380, 383, 854
SspDI	GGCGCC	1 cut(s)	1021
SspI	AATATT	1 cut(s)	1077
SspMI	CTAG	3 cut(s)	59, 519, 921
StyD4I	CCNGG	2 cut(s)	304, 624
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	5 cut(s)	302, 339, 821, 906, 1011
TaiI	ACGT	3 cut(s)	85, 250, 1056
TasI	AATT	4 cut(s)	423, 1030, 1061, 1102
TatI	WGTACW	2 cut(s)	186, 429
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	6 cut(s)	155, 225, 460, 508, 618, 945
Tru1I	TTAA	8 cut(s)	137, 326, 836, 845, 884, 933, 966, 993
Tru9I	TTAA	8 cut(s)	137, 326, 836, 845, 884, 933, 966, 993
TseFI	GTSAC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	2 cut(s)	242, 1086
TspGWI	ACGGA	1 cut(s)	807
Vha464I	CTTAAG	1 cut(s)	992
VpaK11BI	GGWCC	1 cut(s)	813
VspI	ATTAAT	1 cut(s)	933
XapI	RAATTY	1 cut(s)	1061
XbaI	TCTAGA	1 cut(s)	58
XspI	CTAG	3 cut(s)	59, 519, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.