Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004959.1

Orthogroup ID

OG0010975

Physical Location & Seq

Genomic Coordinates Forward (+)

111640 .. 112332

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004959.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgaagaagcagcgctcgtcactcttccacagcttctgcaattcgggaatttcgccggaagatttcaacgcaccggccgaaaccgaaaccaatgcgaagccagataacagaaccgattcggacacgtccgggaagtcgaactcgttcgtcggaacggaggagtacgtggcgccggagatcatatccgccaaaggccacggcttcgaagtcgactggtggtccctgggagtcttactatacgaaatgctgtacggtacgacgccgttcagaggctccaaccggaaggagacgttttaccggatactgaccaaggccccggagctgacgggcgaagcgacgccgttgagagacctgatcaagaacctgctggagaaggatccgaagcagagaatcgggttggatgaaatcaagggccacgagtttttcagaggaatccgcggacggtgggattcggtggcgcaactcccgaggccgccgtatatccccgaggaggtgggcgcgggtacggatgccaataagaaaatagacgtggagtccgtggtggagggaatattcggaaatggcggtggagaggaggagaataagaataaccataaatatgaggaggaggaggagaatgtgaataaaagggtgtggaaggaagaacttaatcaccaccaccccactcaacctgatgccttctctgttttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

230

Amino Acids

26.03

Weight (kDa)

5.2

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25250 AT4G13000
fragaria_vesca	FvH4_2g18040
malus_domestica	MD05G1164900.v1.1 MD10G1154200.v1.1
prunus_persica	Prupe.8G193100_v2.0.a1
pyrus_communis	pycom05g15350 pycom10g13330
rosa_chinensis	RchiOBHm_Chr6g0283431
rosa_laevigata	RLG00000012827
rosa_multiflora	Rmu_sc0003166.1_g000017 Rmu_sc0004959.1_g000020 Rmu_sc0039373.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185540
rosa_rugosa	Rorug06G0154100
rosa_samantha	Rh6AG266400 Rh6BG268900 Rh6CG268800 Rh6DG262200
rosa_wichuraiana	Rw6G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	2 cut(s)	438, 500
AciI	CCGC	6 cut(s)	186, 436, 438, 473, 500, 564
AclWI	GGATC	2 cut(s)	371, 384
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	48
AcyI	GRCGYC	3 cut(s)	170, 260, 338
AfaI	GTAC	4 cut(s)	164, 251, 256, 505
AfeI	AGCGCT	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	269, 490
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	2 cut(s)	217, 532
AjiI	CACGTC	2 cut(s)	126, 529
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	2 cut(s)	33, 322
AluI	AGCT	2 cut(s)	33, 322
Alw26I	GTCTC	2 cut(s)	281, 342
AlwI	GGATC	2 cut(s)	371, 384
AlwNI	CAGNNNCTG	1 cut(s)	36
Ama87I	CYCGRG	2 cut(s)	466, 485
Aor51HI	AGCGCT	1 cut(s)	14
AoxI	GGCC	5 cut(s)	75, 193, 312, 412, 470
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	48
Asp700I	GAANNNNTTC	2 cut(s)	115, 143
AspLEI	GCGC	4 cut(s)	15, 172, 460, 500
AspS9I	GGNCC	3 cut(s)	219, 313, 412
AsuC2I	CCSGG	2 cut(s)	130, 317
AsuHPI	GGTGA	1 cut(s)	644
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	2 cut(s)	466, 485
AvaII	GGWCC	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	22
BceAI	ACGGC	4 cut(s)	214, 247, 325, 460
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	130, 317
BcoDI	GTCTC	2 cut(s)	281, 342
BfoI	RGCGCY	2 cut(s)	16, 173
BfuAI	ACCTGC	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	11, 473
BlsI	GCNGC	2 cut(s)	12, 474
Bme1390I	CCNGG	3 cut(s)	130, 224, 317
Bme18I	GGWCC	1 cut(s)	219
BmeRI	GACNNNNNGTC	2 cut(s)	217, 532
BmeT110I	CYCGRG	2 cut(s)	466, 485
BmgBI	CACGTC	2 cut(s)	126, 529
BmgT120I	GGNCC	3 cut(s)	219, 313, 412
BmiI	GGNNCC	5 cut(s)	171, 221, 274, 315, 378
BmrFI	CCNGG	3 cut(s)	130, 224, 317
BmsI	GCATC	2 cut(s)	499, 664
BpmI	CTGGAG	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	130, 317
BsaAI	YACGTR	1 cut(s)	166
BsaHI	GRCGYC	3 cut(s)	170, 260, 338
BsaI	GGTCTC	1 cut(s)	342
BsaJI	CCNNGG	9 cut(s)	196, 222, 223, 309, 315, 436, 467, 486, 537
BsaWI	WCCGGW	2 cut(s)	279, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 490
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	9 cut(s)	196, 222, 223, 309, 315, 436, 467, 486, 537
BseGI	GGATG	2 cut(s)	406, 514
BseLI	CCNNNNNNNGG	2 cut(s)	269, 490
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	8 cut(s)	173, 503, 587, 590, 617, 620, 623, 626
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	2 cut(s)	438, 500
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	5 cut(s)	77, 195, 314, 414, 472
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	78
BsiHKCI	CYCGRG	2 cut(s)	466, 485
BsiSI	CCGG	7 cut(s)	56, 74, 129, 173, 280, 298, 317
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	269, 490
BsmAI	GTCTC	2 cut(s)	281, 342
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	5 cut(s)	77, 195, 314, 414, 472
Bso31I	GGTCTC	1 cut(s)	342
BsoBI	CYCGRG	2 cut(s)	466, 485
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	177, 354, 376
BspACI	CCGC	6 cut(s)	186, 436, 438, 473, 500, 564
BspANI	GGCC	5 cut(s)	77, 195, 314, 414, 472
BspFNI	CGCG	2 cut(s)	438, 500
BspLI	GGNNCC	5 cut(s)	171, 221, 274, 315, 378
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	371, 384
BspT104I	TTCGAA	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	9 cut(s)	196, 222, 223, 309, 315, 436, 467, 486, 537
BssMI	GATC	3 cut(s)	177, 354, 376
BssNI	GRCGYC	3 cut(s)	170, 260, 338
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	254, 444
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	3 cut(s)	170, 260, 338
BstBAI	YACGTR	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	204
BstDSI	CCRYGG	3 cut(s)	196, 436, 537
BstF5I	GGATG	2 cut(s)	406, 514
BstFNI	CGCG	2 cut(s)	438, 500
BstH2I	RGCGCY	2 cut(s)	16, 173
BstHHI	GCGC	4 cut(s)	15, 172, 460, 500
BstKTI	GATC	3 cut(s)	180, 357, 379
BstMAI	GTCTC	2 cut(s)	281, 342
BstMBI	GATC	3 cut(s)	177, 354, 376
BstMCI	CGRYCG	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	128, 222, 315
BstUI	CGCG	2 cut(s)	438, 500
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BstZI	CGGCCG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	77, 195, 314, 414, 472
BtgI	CCRYGG	3 cut(s)	196, 436, 537
BtrI	CACGTC	2 cut(s)	126, 529
BtsCI	GGATG	2 cut(s)	406, 514
BveI	ACCTGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	36
CfoI	GCGC	4 cut(s)	15, 172, 460, 500
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	3 cut(s)	219, 313, 412
Cfr42I	CCGCGG	1 cut(s)	439
CseI	GACGC	2 cut(s)	268, 346
Csp6I	GTAC	4 cut(s)	163, 250, 255, 504
CviQI	GTAC	4 cut(s)	163, 250, 255, 504
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	3 cut(s)	179, 356, 378
DpnII	GATC	3 cut(s)	177, 354, 376
DriI	GACNNNNNGTC	2 cut(s)	217, 532
EaeI	YGGCCR	1 cut(s)	75
EagI	CGGCCG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	29
Eam1105I	GACNNNNNGTC	2 cut(s)	217, 532
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	219
Eco47III	AGCGCT	1 cut(s)	14
Eco52I	CGGCCG	1 cut(s)	75
Eco88I	CYCGRG	2 cut(s)	466, 485
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	281
FaiI	YATR	5 cut(s)	182, 238, 480, 594, 600
FaqI	GGGAC	1 cut(s)	205
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	11, 473
FokI	GGATG	2 cut(s)	413, 521
Fsp4HI	GCNGC	2 cut(s)	11, 473
GlaI	GCGC	4 cut(s)	14, 171, 459, 499
GluI	GCNGC	2 cut(s)	11, 473
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	2 cut(s)	16, 173
HaeIII	GGCC	5 cut(s)	77, 195, 314, 414, 472
HapII	CCGG	7 cut(s)	56, 74, 129, 173, 280, 298, 317
HgaI	GACGC	2 cut(s)	268, 346
HhaI	GCGC	4 cut(s)	15, 172, 460, 500
Hin1I	GRCGYC	3 cut(s)	170, 260, 338
Hin6I	GCGC	4 cut(s)	13, 170, 458, 498
HinP1I	GCGC	4 cut(s)	13, 170, 458, 498
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	6 cut(s)	116, 228, 390, 432, 449, 533
HpaII	CCGG	7 cut(s)	56, 74, 129, 173, 280, 298, 317
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	6 cut(s)	121, 152, 269, 381, 428, 557
Hpy188III	TCNNGA	3 cut(s)	45, 358, 466
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	3 cut(s)	152, 262, 340
HpyAV	CCTTC	4 cut(s)	277, 367, 631, 688
HpyCH4III	ACNGT	2 cut(s)	254, 444
HpyCH4IV	ACGT	4 cut(s)	125, 165, 290, 528
HpyCH4V	TGCA	1 cut(s)	39
HpySE526I	ACGT	4 cut(s)	125, 165, 290, 528
Hsp92I	GRCGYC	3 cut(s)	170, 260, 338
HspAI	GCGC	4 cut(s)	13, 170, 458, 498
KasI	GGCGCC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	354
KspI	CCGCGG	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	177, 354, 376
LmnI	GCTCC	2 cut(s)	278, 319
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	499, 664
MaeII	ACGT	4 cut(s)	125, 165, 290, 528
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	3 cut(s)	179, 356, 378
MboI	GATC	3 cut(s)	177, 354, 376
MboII	GAAGA	4 cut(s)	16, 16, 71, 653
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	2 cut(s)	40, 48
Mly113I	GGCGCC	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	237, 542
MmeI	TCCRAC	3 cut(s)	130, 300, 378
MroXI	GAANNNNTTC	2 cut(s)	115, 143
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	7 cut(s)	56, 74, 129, 173, 280, 298, 317
MspR9I	CCNGG	3 cut(s)	130, 224, 317
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	2 cut(s)	438, 500
NarI	GGCGCC	1 cut(s)	170
NciI	CCSGG	2 cut(s)	130, 317
NdeII	GATC	3 cut(s)	177, 354, 376
NlaIV	GGNNCC	5 cut(s)	171, 221, 274, 315, 378
NmuCI	GTSAC	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	204
PasI	CCCWGGG	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 332, 534
PdmI	GAANNNNTTC	2 cut(s)	115, 143
PfeI	GAWTC	4 cut(s)	116, 390, 432, 449
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	12, 474
PleI	GAGTC	2 cut(s)	236, 541
PluTI	GGCGCC	1 cut(s)	173
PpsI	GAGTC	2 cut(s)	236, 541
Ppu21I	YACGTR	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	5 cut(s)	171, 221, 274, 315, 378
PspPI	GGNCC	3 cut(s)	219, 313, 412
PstNI	CAGNNNCTG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	4 cut(s)	164, 251, 256, 505
RsaNI	GTAC	4 cut(s)	163, 250, 255, 504
RseI	CAYNNNNRTG	1 cut(s)	597
SacII	CCGCGG	1 cut(s)	439
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	2 cut(s)	11, 473
Sau3AI	GATC	3 cut(s)	177, 354, 376
Sau96I	GGNCC	3 cut(s)	219, 313, 412
SchI	GAGTC	2 cut(s)	237, 542
ScrFI	CCNGG	3 cut(s)	130, 224, 317
SfaNI	GCATC	2 cut(s)	499, 664
SfoI	GGCGCC	1 cut(s)	171
Sfr303I	CCGCGG	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	2 cut(s)	40, 48
SsiI	CCGC	6 cut(s)	186, 436, 438, 473, 500, 564
SspDI	GGCGCC	1 cut(s)	169
SspI	AATATT	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	128, 222, 315
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	254, 444
TaiI	ACGT	4 cut(s)	128, 168, 293, 531
TaqI	TCGA	3 cut(s)	137, 204, 210
TasI	AATT	2 cut(s)	40, 48
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	4 cut(s)	116, 390, 432, 449
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	17, 417
TspGWI	ACGGA	3 cut(s)	170, 521, 526
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	2 cut(s)	115, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.