MD05G1164900.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
29348603 .. 29350141
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1164900.v1.1.491

Sequence Viewer

Length: 1332 bp
ATGGACGATCAGAACGACGGCGTCGCGGTTCCCAGCTTGGATTTCCGGCGGCTGAGTGTGATCTCGGCGCTGGGCAGAGGAGCCAAGGGCGTGGTGTTTCTGGTGAAGGGAGAAGAGACGGCGGCGGAGGGGCTAATGGCCTTGAAGGTGATTTCCAAGGACTTAATCGAGCGGAGGAGTAAAGATCCGAAGAGCGACGGCAGCGAGTACCGCAGAGTTAGCTTCGAGCAGCAAGTAATACGTCGTTTCGAGCACCCGCTCTTGCCTAAATTGCATGGCGTTCTCGACACTGAGAAGTTCGTCGGCTACGCCATTGAATACTGCCCCGGGCGCGATCTCAATTGCCTCAGGAAACGACAAACCGAGCGGATGTTCTCCGATGAGGTCATCAGATTTTACGCGGCGGAATTGGTTCTGGTATTGGATTATTTGCACGGATTAGGAGTTGTTTACAGAGATTTGAAGCCGGAGAACATCATGATCCAAGAAAATGGTCACATTATGCTCGTGGATTTCGATCTCTCCACCGAGCTTTCTCCCGTAAAGACTTCTCCTCGATCACCTCAATCGGCTCCGATCAGATCAAATTCAGTAGCGAAATCGAACCCGGTGCACAAGAAGAGGCGCTCGCCGTTCCACCGCTTCTGTAACTCGGGGATTTCGCCCGACGACACGGTGGCGCTGCCTGAAGCTGGCGTCGTCAACTTGGAAAACTCCGAGAAGTCCAACTCGTTCGTTGGGACGGAGGAGTACGTGGCGCCCGAAATCGTATCGGGCCAGGGACACGATTTCGGCGTCGATTGGTGGTCCCTCGGGATTCTTCTTTACGAAATGCTGTACGGTACCACGCCGTTCAAGGGGATCAACAGAAAGGAGACGTTTTATCGGATACTGACAAAAACTCCAGAACTGACGGGCGAAACGACGGCGTTGAGGGACCTGATAAAAAAGTTGCTTGAGAAGGATCCGAAGCAGAGAATCGGGTCGGGCGAAATCAAGGGCCACGATTTCTTTAAAGCGGTGGAGTGGGATTCGGTTTTGGGACTGTTGAGGCCGCCGTACATCCCCGTTATTGCAACGGCGGAGGGTACGGAGGGAATAGAAAAGAAAATAGATGTGGAGACGGTGGTGAAGGGAATATTCGGAGGAGAAGGTGGTGGTGGTGGTGGGGACGAAGAGGATAAAGGCGAGGATAACGAGGAGAATAACAAAAATAGGAATAATAATAATGAGAAGGGAGGGAATGAGGAGGAGAAAGTAAATAAAAGGGTGTGGGTGGAAGGATTGAATAACAATCCCACCCAAGGTGGCGATGCATTTTTGGTTTTCTAA

Protein Analysis

444

Amino Acids

49.37

Weight (kDa)

5.46

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 20 - 182 1.3e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 20 - 182 5.3e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 235 - 338 1.5e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 247 - 328 1.3e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010975)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 842
AccB1I GGYRCC 2 cut(s) 757, 842
AccBSI CCGCTC 3 cut(s) 172, 259, 367
AccII CGCG 3 cut(s) 26, 333, 401
AclWI GGATC 5 cut(s) 179, 475, 869, 959, 972
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 708
AcyI GRCGYC 4 cut(s) 21, 696, 758, 795
AfaI GTAC 6 cut(s) 209, 752, 839, 844, 1061, 1090
AfiI CCNNNNNNNGG 3 cut(s) 692, 857, 1304
AgsI TTSAA 5 cut(s) 145, 317, 463, 856, 1288
AjnI CCWGG 1 cut(s) 777
AluBI AGCT 4 cut(s) 36, 222, 532, 692
AluI AGCT 4 cut(s) 36, 222, 532, 692
Alw21I GWGCWC 2 cut(s) 255, 615
Alw26I GTCTC 3 cut(s) 110, 869, 1115
Alw44I GTGCAC 1 cut(s) 611
AlwI GGATC 5 cut(s) 179, 475, 869, 959, 972
Ama87I CYCGRG 3 cut(s) 326, 652, 812
AoxI GGCC 4 cut(s) 138, 775, 1000, 1052
ApaLI GTGCAC 1 cut(s) 611
ApeKI GCWGC 3 cut(s) 201, 229, 682
ApoI RAATTY 1 cut(s) 586
Asp700I GAANNNNTTC 1 cut(s) 411
Asp718I GGTACC 1 cut(s) 842
AspLEI GCGC 5 cut(s) 70, 333, 627, 682, 760
AspS9I GGNCC 4 cut(s) 775, 807, 937, 1000
AsuC2I CCSGG 3 cut(s) 327, 328, 608
AsuHPI GGTGA 4 cut(s) 115, 160, 552, 1141
AvaI CYCGRG 3 cut(s) 326, 652, 812
AvaII GGWCC 2 cut(s) 807, 937
AxyI CCTNAGG 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 615
BamHI GGATCC 1 cut(s) 964
BanI GGYRCC 2 cut(s) 757, 842
BauI CACGAG 1 cut(s) 506
Bbv12I GWGCWC 2 cut(s) 255, 615
BbvI GCAGC 3 cut(s) 213, 241, 669
BceAI ACGGC 8 cut(s) 34, 135, 214, 616, 835, 942, 1042, 1095
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BciT130I CCWGG 1 cut(s) 779
BciVI GTATCC 1 cut(s) 882
BcnI CCSGG 3 cut(s) 327, 328, 608
BcoDI GTCTC 3 cut(s) 110, 869, 1115
BfoI RGCGCY 4 cut(s) 71, 628, 683, 761
BfuI GTATCC 1 cut(s) 882
BisI GCNGC 7 cut(s) 50, 123, 202, 230, 402, 683, 1055
BlsI GCNGC 7 cut(s) 51, 124, 203, 231, 403, 684, 1056
Bme1390I CCNGG 4 cut(s) 327, 328, 608, 779
Bme18I GGWCC 2 cut(s) 807, 937
BmeT110I CYCGRG 3 cut(s) 326, 652, 812
BmgT120I GGNCC 4 cut(s) 775, 807, 937, 1000
BmiI GGNNCC 8 cut(s) 30, 82, 573, 759, 809, 844, 938, 966
BmrFI CCNGG 4 cut(s) 327, 328, 608, 779
BmsI GCATC 1 cut(s) 1303
BpmI CTGGAG 1 cut(s) 888
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 3 cut(s) 327, 328, 608
BsaAI YACGTR 1 cut(s) 754
BsaBI GATNNNNATC 1 cut(s) 516
BsaHI GRCGYC 4 cut(s) 21, 696, 758, 795
BsaJI CCNNGG 7 cut(s) 84, 156, 325, 326, 778, 811, 1303
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bsc4I CCNNNNNNNGG 3 cut(s) 692, 857, 1304
Bse21I CCTNAGG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 7 cut(s) 84, 156, 325, 326, 778, 811, 1303
BseGI GGATG 2 cut(s) 375, 1062
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 692, 857, 1304
BseMII CTCAG 3 cut(s) 44, 282, 361
BseRI GAGGAG 8 cut(s) 93, 190, 543, 761, 1161, 1214, 1262, 1265
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 3 cut(s) 213, 241, 669
BseYI CCCAGC 2 cut(s) 32, 70
Bsh1236I CGCG 3 cut(s) 26, 333, 401
BshFI GGCC 4 cut(s) 140, 777, 1002, 1054
BshNI GGYRCC 2 cut(s) 757, 842
BsiHKAI GWGCWC 2 cut(s) 255, 615
BsiHKCI CYCGRG 3 cut(s) 326, 652, 812
BsiSI CCGG 4 cut(s) 46, 327, 467, 608
BslFI GGGAC 6 cut(s) 754, 793, 795, 950, 1056, 1184
BslI CCNNNNNNNGG 3 cut(s) 692, 857, 1304
BsmAI GTCTC 3 cut(s) 110, 869, 1115
BsmBI CGTCTC 3 cut(s) 110, 869, 1115
BsmFI GGGAC 6 cut(s) 754, 793, 795, 950, 1056, 1184
BsnI GGCC 4 cut(s) 140, 777, 1002, 1054
BsoBI CYCGRG 3 cut(s) 326, 652, 812
Bsp1286I GDGCHC 2 cut(s) 255, 615
BspANI GGCC 4 cut(s) 140, 777, 1002, 1054
BspCNI CTCAG 3 cut(s) 45, 283, 360
BspFNI CGCG 3 cut(s) 26, 333, 401
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 8 cut(s) 30, 82, 573, 759, 809, 844, 938, 966
BspPI GGATC 5 cut(s) 179, 475, 869, 959, 972
BspQI GCTCTTC 1 cut(s) 185
BspT107I GGYRCC 2 cut(s) 757, 842
BsrBI CCGCTC 3 cut(s) 172, 259, 367
BssECI CCNNGG 7 cut(s) 84, 156, 325, 326, 778, 811, 1303
BssNI GRCGYC 4 cut(s) 21, 696, 758, 795
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 3 cut(s) 84, 156, 1303
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 4 cut(s) 676, 842, 1047, 1126
Bst6I CTCTTC 4 cut(s) 108, 185, 614, 1170
BstACI GRCGYC 4 cut(s) 21, 696, 758, 795
BstBAI YACGTR 1 cut(s) 754
BstC8I GCNNGC 2 cut(s) 629, 694
BstDEI CTNAG 3 cut(s) 53, 291, 347
BstF5I GGATG 2 cut(s) 375, 1062
BstFNI CGCG 3 cut(s) 26, 333, 401
BstH2I RGCGCY 4 cut(s) 71, 628, 683, 761
BstHHI GCGC 5 cut(s) 70, 333, 627, 682, 760
BstMAI GTCTC 3 cut(s) 110, 869, 1115
BstMWI GCNNNNNNNGC 5 cut(s) 201, 210, 219, 271, 330
BstNI CCWGG 1 cut(s) 779
BstSCI CCNGG 4 cut(s) 325, 326, 606, 777
BstSLI GKGCMC 1 cut(s) 615
BstUI CGCG 3 cut(s) 26, 333, 401
BstV1I GCAGC 3 cut(s) 213, 241, 669
BstX2I RGATCY 2 cut(s) 184, 964
BstXI CCANNNNNNTGG 2 cut(s) 91, 491
BstYI RGATCY 2 cut(s) 184, 964
Bsu36I CCTNAGG 1 cut(s) 347
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 4 cut(s) 140, 777, 1002, 1054
BtgZI GCGATG 1 cut(s) 1326
BtsCI GGATG 2 cut(s) 375, 1062
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 629, 694
CciI TCATGA 1 cut(s) 477
CfoI GCGC 5 cut(s) 70, 333, 627, 682, 760
Cfr13I GGNCC 4 cut(s) 775, 807, 937, 1000
Cfr9I CCCGGG 1 cut(s) 326
CseI GACGC 3 cut(s) 10, 685, 784
Csp6I GTAC 6 cut(s) 208, 751, 838, 843, 1060, 1089
CviAII CATG 2 cut(s) 275, 478
CviQI GTAC 6 cut(s) 208, 751, 838, 843, 1060, 1089
DdeI CTNAG 3 cut(s) 53, 291, 347
DinI GGCGCC 1 cut(s) 759
DraI TTTAAA 1 cut(s) 1015
Eam1104I CTCTTC 4 cut(s) 108, 185, 614, 1170
EarI CTCTTC 4 cut(s) 108, 185, 614, 1170
EciI GGCGGA 3 cut(s) 140, 419, 1097
Eco130I CCWWGG 3 cut(s) 84, 156, 1303
Eco47I GGWCC 2 cut(s) 807, 937
Eco57I CTGAAG 1 cut(s) 708
Eco81I CCTNAGG 1 cut(s) 347
Eco88I CYCGRG 3 cut(s) 326, 652, 812
EcoO109I RGGNCCY 1 cut(s) 937
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 3 cut(s) 84, 156, 1303
EcoT22I ATGCAT 1 cut(s) 1318
EgeI GGCGCC 1 cut(s) 759
EheI GGCGCC 1 cut(s) 759
ErhI CCWWGG 3 cut(s) 84, 156, 1303
Esp3I CGTCTC 3 cut(s) 110, 869, 1115
FaeI CATG 2 cut(s) 278, 481
FaiI YATR 3 cut(s) 276, 479, 503
FaqI GGGAC 6 cut(s) 754, 793, 795, 950, 1056, 1184
FatI CATG 2 cut(s) 274, 477
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 7 cut(s) 50, 123, 202, 230, 402, 683, 1055
FokI GGATG 2 cut(s) 382, 1049
Fsp4HI GCNGC 7 cut(s) 50, 123, 202, 230, 402, 683, 1055
GlaI GCGC 5 cut(s) 69, 332, 626, 681, 759
GluI GCNGC 7 cut(s) 50, 123, 202, 230, 402, 683, 1055
GsaI CCCAGC 2 cut(s) 36, 74
GsuI CTGGAG 1 cut(s) 888
HaeII RGCGCY 4 cut(s) 71, 628, 683, 761
HaeIII GGCC 4 cut(s) 140, 777, 1002, 1054
HapII CCGG 4 cut(s) 46, 327, 467, 608
HgaI GACGC 3 cut(s) 10, 685, 784
HhaI GCGC 5 cut(s) 70, 333, 627, 682, 760
Hin1I GRCGYC 4 cut(s) 21, 696, 758, 795
Hin1II CATG 2 cut(s) 278, 481
Hin6I GCGC 5 cut(s) 68, 331, 625, 680, 758
HinP1I GCGC 5 cut(s) 68, 331, 625, 680, 758
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 3 cut(s) 817, 978, 1031
HpaII CCGG 4 cut(s) 46, 327, 467, 608
HphI GGTGA 4 cut(s) 115, 160, 552, 1141
Hpy166II GTNNAC 3 cut(s) 451, 613, 703
Hpy188III TCNNGA 5 cut(s) 284, 349, 478, 814, 905
Hpy8I GTNNAC 3 cut(s) 451, 613, 703
Hpy99I CGWCG 9 cut(s) 20, 26, 200, 246, 305, 671, 701, 800, 928
HpyAV CCTTC 7 cut(s) 100, 139, 955, 1126, 1145, 1228, 1274
HpyCH4III ACNGT 4 cut(s) 676, 842, 1047, 1126
HpyCH4IV ACGT 3 cut(s) 241, 753, 878
HpyCH4V TGCA 5 cut(s) 274, 433, 613, 1076, 1316
HpyF10VI GCNNNNNNNGC 5 cut(s) 201, 210, 219, 271, 330
HpyF3I CTNAG 3 cut(s) 53, 291, 347
HpySE526I ACGT 3 cut(s) 241, 753, 878
Hsp92I GRCGYC 4 cut(s) 21, 696, 758, 795
Hsp92II CATG 2 cut(s) 278, 481
HspAI GCGC 5 cut(s) 68, 331, 625, 680, 758
KasI GGCGCC 1 cut(s) 757
KpnI GGTACC 1 cut(s) 846
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 80, 577
Lsp1109I GCAGC 3 cut(s) 213, 241, 669
LweI GCATC 1 cut(s) 1303
MaeII ACGT 3 cut(s) 241, 753, 878
MaeIII GTNAC 2 cut(s) 494, 647
MbiI CCGCTC 3 cut(s) 172, 259, 367
MboII GAAGA 5 cut(s) 125, 202, 631, 812, 1187
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 2 cut(s) 184, 964
MhlI GDGCHC 2 cut(s) 255, 615
MluCI AATT 4 cut(s) 269, 340, 407, 586
Mly113I GGCGCC 1 cut(s) 758
MmeI TCCRAC 1 cut(s) 750
Mph1103I ATGCAT 1 cut(s) 1318
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 2 cut(s) 164, 1014
MspI CCGG 4 cut(s) 46, 327, 467, 608
MspR9I CCNGG 4 cut(s) 327, 328, 608, 779
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 779
MvnI CGCG 3 cut(s) 26, 333, 401
MwoI GCNNNNNNNGC 5 cut(s) 201, 210, 219, 271, 330
NarI GGCGCC 1 cut(s) 758
NciI CCSGG 3 cut(s) 327, 328, 608
NlaIII CATG 2 cut(s) 278, 481
NlaIV GGNNCC 8 cut(s) 30, 82, 573, 759, 809, 844, 938, 966
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 494
NsiI ATGCAT 1 cut(s) 1318
PagI TCATGA 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 6 cut(s) 12, 513, 759, 792, 920, 987
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 3 cut(s) 817, 978, 1031
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 7 cut(s) 51, 124, 203, 231, 403, 684, 1056
PluTI GGCGCC 1 cut(s) 761
Ppu21I YACGTR 1 cut(s) 754
PpuMI RGGWCCY 1 cut(s) 937
Psp5II RGGWCCY 1 cut(s) 937
Psp6I CCWGG 1 cut(s) 777
PspFI CCCAGC 2 cut(s) 32, 70
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 8 cut(s) 30, 82, 573, 759, 809, 844, 938, 966
PspPI GGNCC 4 cut(s) 775, 807, 937, 1000
PspPPI RGGWCCY 1 cut(s) 937
PsuI RGATCY 2 cut(s) 184, 964
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 6 cut(s) 209, 752, 839, 844, 1061, 1090
RsaNI GTAC 6 cut(s) 208, 751, 838, 843, 1060, 1089
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 164, 1014
SatI GCNGC 7 cut(s) 50, 123, 202, 230, 402, 683, 1055
Sau96I GGNCC 4 cut(s) 775, 807, 937, 1000
ScrFI CCNGG 4 cut(s) 327, 328, 608, 779
SduI GDGCHC 2 cut(s) 255, 615
SfaNI GCATC 1 cut(s) 1303
SfoI GGCGCC 1 cut(s) 759
SinI GGWCC 2 cut(s) 807, 937
SmaI CCCGGG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 4 cut(s) 269, 340, 407, 586
SspDI GGCGCC 1 cut(s) 757
SspI AATATT 1 cut(s) 1140
StyD4I CCNGG 4 cut(s) 325, 326, 606, 777
StyI CCWWGG 3 cut(s) 84, 156, 1303
TaaI ACNGT 4 cut(s) 676, 842, 1047, 1126
TaiI ACGT 3 cut(s) 244, 756, 881
TaqI TCGA 8 cut(s) 168, 225, 249, 285, 516, 556, 602, 798
TasI AATT 4 cut(s) 269, 340, 407, 586
TauI GCSGC 4 cut(s) 52, 125, 404, 1057
TfiI GAWTC 3 cut(s) 817, 978, 1031
Tru1I TTAA 2 cut(s) 164, 1014
Tru9I TTAA 2 cut(s) 164, 1014
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 3 cut(s) 201, 229, 682
Tsp45I GTSAC 1 cut(s) 494
TspGWI ACGGA 3 cut(s) 450, 758, 1106
TspMI CCCGGG 1 cut(s) 326
TspRI CASTG 1 cut(s) 295
Tth111I GACNNNGTC 1 cut(s) 20
VneI GTGCAC 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 807, 937
XapI RAATTY 1 cut(s) 586
XmaI CCCGGG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.