Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039373.1

Orthogroup ID

OG0010975

Physical Location & Seq

Genomic Coordinates Forward (+)

41 .. 490

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039373.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgctgtacggtacgacgccgttcagaggctccaaccggaaagagacgttttaccggatactgaccaaggccccggagctgacgggcgaagcgacgccgttaagggacctgatcaagaacctgctggagaaggatccgaagcagagaatcgatttggatgaaatcaagggccacgagtttttcagaggaatccgcggacggtgggattcggtggcgcaactcccgaggccgccgtatatccccgaggaggtgggcgagggtacggatggcaataagaaaatcgacgtggagtccgtggtggagggaatattcggaaatggcggtggagaggaggagaataagaataaccataaatatgaggaggaggaggagaatgtgaataaaagggtgtggaaggaagaacttaatcaccaccaccccactcaacctgatgccttctctgttttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

149

Amino Acids

17.19

Weight (kDa)

5.32

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25250 AT4G13000
fragaria_vesca	FvH4_2g18040
malus_domestica	MD05G1164900.v1.1 MD10G1154200.v1.1
prunus_persica	Prupe.8G193100_v2.0.a1
pyrus_communis	pycom05g15350 pycom10g13330
rosa_chinensis	RchiOBHm_Chr6g0283431
rosa_laevigata	RLG00000012827
rosa_multiflora	Rmu_sc0003166.1_g000017 Rmu_sc0004959.1_g000020 Rmu_sc0039373.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185540
rosa_rugosa	Rorug06G0154100
rosa_samantha	Rh6AG266400 Rh6BG268900 Rh6CG268800 Rh6DG262200
rosa_wichuraiana	Rw6G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AccII	CGCG	1 cut(s)	195
AciI	CCGC	4 cut(s)	193, 195, 230, 321
AclWI	GGATC	2 cut(s)	128, 141
AcyI	GRCGYC	2 cut(s)	17, 95
AfaI	GTAC	3 cut(s)	8, 13, 262
AfiI	CCNNNNNNNGG	2 cut(s)	26, 247
AhdI	GACNNNNNGTC	1 cut(s)	289
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	128, 141
Ama87I	CYCGRG	2 cut(s)	223, 242
AoxI	GGCC	3 cut(s)	69, 169, 227
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	3 cut(s)	70, 106, 169
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	401
AvaI	CYCGRG	2 cut(s)	223, 242
AvaII	GGWCC	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	173
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	3 cut(s)	4, 82, 217
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	2 cut(s)	223, 242
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	70, 106, 169
BmiI	GGNNCC	4 cut(s)	31, 72, 107, 135
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	150
BsaHI	GRCGYC	2 cut(s)	17, 95
BsaJI	CCNNGG	6 cut(s)	66, 72, 193, 224, 243, 294
BsaWI	WCCGGW	2 cut(s)	36, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 247
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	6 cut(s)	66, 72, 193, 224, 243, 294
BseGI	GGATG	2 cut(s)	163, 271
BseLI	CCNNNNNNNGG	2 cut(s)	26, 247
BseRI	GAGGAG	7 cut(s)	260, 344, 347, 374, 377, 380, 383
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	71, 171, 229
BshVI	ATCGAT	1 cut(s)	150
BsiHKCI	CYCGRG	2 cut(s)	223, 242
BsiSI	CCGG	3 cut(s)	37, 55, 74
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	26, 247
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	71, 171, 229
BsoBI	CYCGRG	2 cut(s)	223, 242
Bsp143I	GATC	2 cut(s)	111, 133
BspACI	CCGC	4 cut(s)	193, 195, 230, 321
BspANI	GGCC	3 cut(s)	71, 171, 229
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	31, 72, 107, 135
BspMI	ACCTGC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	128, 141
BssECI	CCNNGG	6 cut(s)	66, 72, 193, 224, 243, 294
BssMI	GATC	2 cut(s)	111, 133
BssNI	GRCGYC	2 cut(s)	17, 95
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	11, 201
BstACI	GRCGYC	2 cut(s)	17, 95
BstDSI	CCRYGG	2 cut(s)	193, 294
BstF5I	GGATG	2 cut(s)	163, 271
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	114, 136
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	111, 133
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	71, 171, 229
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	2 cut(s)	193, 294
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	163, 271
BveI	ACCTGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	70, 106, 169
Cfr42I	CCGCGG	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	2 cut(s)	25, 103
Csp6I	GTAC	3 cut(s)	7, 12, 261
CviJI	RGCY	5 cut(s)	30, 71, 79, 171, 229
CviKI_1	RGCY	5 cut(s)	30, 71, 79, 171, 229
CviQI	GTAC	3 cut(s)	7, 12, 261
DpnI	GATC	2 cut(s)	113, 135
DpnII	GATC	2 cut(s)	111, 133
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	106
Eco88I	CYCGRG	2 cut(s)	223, 242
EcoO109I	RGGNCCY	2 cut(s)	70, 106
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	38
FaiI	YATR	3 cut(s)	237, 351, 357
FaqI	GGGAC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	170, 278
Fsp4HI	GCNGC	1 cut(s)	230
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	71, 171, 229
HapII	CCGG	3 cut(s)	37, 55, 74
HgaI	GACGC	2 cut(s)	25, 103
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	2 cut(s)	17, 95
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	4 cut(s)	147, 189, 206, 290
HpaII	CCGG	3 cut(s)	37, 55, 74
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	4 cut(s)	26, 138, 185, 314
Hpy188III	TCNNGA	2 cut(s)	115, 223
Hpy99I	CGWCG	3 cut(s)	19, 97, 287
HpyAV	CCTTC	3 cut(s)	124, 388, 445
HpyCH4III	ACNGT	2 cut(s)	11, 201
HpyCH4IV	ACGT	2 cut(s)	47, 285
HpySE526I	ACGT	2 cut(s)	47, 285
Hsp92I	GRCGYC	2 cut(s)	17, 95
HspAI	GCGC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	111
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	111, 133
LmnI	GCTCC	2 cut(s)	35, 76
LpnPI	CCDG	7 cut(s)	50, 68, 87, 110, 122, 134, 441
LweI	GCATC	1 cut(s)	421
MaeII	ACGT	2 cut(s)	47, 285
MalI	GATC	2 cut(s)	113, 135
MboI	GATC	2 cut(s)	111, 133
MboII	GAAGA	1 cut(s)	410
MflI	RGATCY	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	2 cut(s)	101, 405
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	37, 55, 74
MspR9I	CCNGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	195
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	111, 133
NlaIV	GGNNCC	4 cut(s)	31, 72, 107, 135
PcsI	WCGNNNNNNNCGW	2 cut(s)	89, 291
PfeI	GAWTC	3 cut(s)	147, 189, 206
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	4 cut(s)	31, 72, 107, 135
PspPI	GGNCC	3 cut(s)	70, 106, 169
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	3 cut(s)	8, 13, 262
RsaNI	GTAC	3 cut(s)	7, 12, 261
RseI	CAYNNNNRTG	1 cut(s)	354
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	101, 405
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	111, 133
Sau96I	GGNCC	3 cut(s)	70, 106, 169
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	7 cut(s)	50, 81, 111, 123, 252, 288, 430
SfaNI	GCATC	1 cut(s)	421
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	354
SsiI	CCGC	4 cut(s)	193, 195, 230, 321
SspI	AATATT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	11, 201
TaiI	ACGT	2 cut(s)	50, 288
TaqI	TCGA	2 cut(s)	150, 282
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	3 cut(s)	147, 189, 206
Tru1I	TTAA	2 cut(s)	101, 405
Tru9I	TTAA	2 cut(s)	101, 405
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	2 cut(s)	278, 283
VpaK11BI	GGWCC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.