AT4G13620

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016683
Physical Location & Seq
Forward (+)
7932131 .. 7933579
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13620.1

Sequence Viewer

Length: 1167 bp
ATGATCACACCAATACACACACAACACTCCTTAATTCTCGTATATATAAACATTTATTCTCCACCTATTTTGTCAAAATTAAGAACAGGCTTCATTCTCTGGACAAACACTCAAAAAACAAACAAAAAAAGGAACATGGAAGATCAGTTTCCTAAAATAGAAACTAGCTTCATGCACGACAAGCTCTTGTCTTCTGGAATCTACGGGTTCTTGAGTTCTTCGACGCCGCCACAACTTCTCGGTGTTCCAATATTTTTGGAAGGTATGAAATCTCCTCTTCTTCCTGCTTCTTCGACTCCGAGCTACTTTGTGTCGCCTCATGATCATGAGCTCACATCTTCTATTCATCCATCTCCGGTAGCTTCTGTTCCTTGGAACTTTCTAGAATCTTTTCCTCAGTCTCAACATCCTGATCATCATCCTTCTAAACCTCCAAACCTTACTTTGTTCCTTAAAGAACCAAAGCTACTAGAACTTTCTCAATCCGAAAGCAACATGAGCCCTTACCATAAATACATCCCAAACTCCTTTTATCAATCAGACCAAAACAGAAACGAATGGGTAGAGATCAATAAAACTCTAACCAACTATCCCTCGAAAGGTTTTGGAAACTATTGGCTAAGTACCACCAAGACTCAACCCATGAAGTCAAAAACAAGAAAGGTTGTTCAGACGACGACCCCAACAAAACTGTATAGAGGAGTGAGACAAAGACACTGGGGCAAATGGGTCGCAGAGATTAGGCTTCCAAGGAACAGAACCCGTGTTTGGCTCGGCACTTTTGAAACCGCTGAGCAAGCAGCAATGGCTTACGATACAGCAGCTTATATCCTTCGTGGCGAATTCGCACACCTCAACTTTCCTGATCTTAAACACCAGCTCAAGTCCGGTTCTTTGCGATGCATGATCGCCTCACTTTTGGAGTCCAAGATTCAACAGATCTCATCTTCCCAAGTAAGTAACTCTCCTTCTCCTCCTCCTCCAAAAGTGGGAACACCGGAGCAAAAGAATCATCACATGAAGATGGAGTCAGGAGAAGACGTGATGATGAAGAAACAGAAAAGCCATAAGGAAGTGATGGAAGGAGATGGTGTACAATTGAGTAGGATGCCTTCTTTGGATATGGATCTCATTTGGGATGCTCTCTCATTTCCTCATTCTTCTTGA

Protein Analysis

388

Amino Acids

44.25

Weight (kDa)

9.46

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 231 - 280 6.2e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13620
malus_domestica MD04G1009000.v1.1
prunus_persica Prupe.1G008400_v2.0.a1
pyrus_communis pycom04g00700
rosa_chinensis RchiOBHm_Chr4g0415231
rosa_laevigata RLG00000008088
rosa_multiflora Rmu_sc0001421.1_g000007
rosa_roxburghii Rroxscaffold_5G00359040
rosa_rugosa Rorug04G0132500
rosa_samantha Rh4AG193100 Rh4BG191500 Rh4CG204200 Rh4DG191000
rosa_wichuraiana Rw4G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 227, 789
AclWI GGATC 1 cut(s) 1134
AcsI RAATTY 1 cut(s) 842
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 2 cut(s) 625, 1095
AfiI CCNNNNNNNGG 3 cut(s) 599, 768, 989
AgsI TTSAA 2 cut(s) 785, 935
AjiI CACGTC 1 cut(s) 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 751, 783
AluBI AGCT 8 cut(s) 168, 184, 303, 331, 362, 466, 824, 880
AluI AGCT 8 cut(s) 168, 184, 303, 331, 362, 466, 824, 880
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 405, 700
AlwI GGATC 1 cut(s) 1134
ApeKI GCWGC 2 cut(s) 800, 821
ApoI RAATTY 1 cut(s) 842
Asp700I GAANNNNTTC 1 cut(s) 390
BanII GRGCYC 2 cut(s) 333, 503
BarI GAAGNNNNNNTAC 4 cut(s) 952, 984, 1096, 1128
BbsI GAAGAC 2 cut(s) 183, 1044
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 812, 833
BccI CCATC 4 cut(s) 358, 1018, 1072, 1082
BcgI CGANNNNNNTGC 2 cut(s) 712, 746
BclI TGATCA 3 cut(s) 3, 322, 412
BcoDI GTCTC 2 cut(s) 405, 700
BfaI CTAG 3 cut(s) 165, 383, 470
BglII AGATCT 1 cut(s) 939
BisI GCNGC 3 cut(s) 227, 801, 822
BlpI GCTNAGC 1 cut(s) 792
BlsI GCNGC 3 cut(s) 228, 802, 823
BmgBI CACGTC 1 cut(s) 1042
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 3 cut(s) 890, 1098, 1129
BmuI ACTGGG 1 cut(s) 727
BpiI GAAGAC 2 cut(s) 183, 1044
Bpu1102I GCTNAGC 1 cut(s) 792
BpuEI CTTGAG 2 cut(s) 232, 866
BsaBI GATNNNNATC 2 cut(s) 417, 1125
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 371, 749
BsaWI WCCGGW 3 cut(s) 355, 887, 997
BsaXI ACNNNNNCTCC 4 cut(s) 1026, 1056, 1077, 1107
Bsc4I CCNNNNNNNGG 3 cut(s) 599, 768, 989
Bse1I ACTGG 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 810
Bse8I GATNNNNATC 2 cut(s) 417, 1125
BseDI CCNNGG 2 cut(s) 371, 749
BseGI GGATG 6 cut(s) 346, 406, 418, 516, 1113, 1144
BseJI GATNNNNATC 2 cut(s) 417, 1125
BseLI CCNNNNNNNGG 3 cut(s) 599, 768, 989
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 2 cut(s) 410, 783
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 5 cut(s) 264, 714, 963, 966, 969
BseXI GCAGC 2 cut(s) 812, 833
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 3 cut(s) 356, 888, 998
BslI CCNNNNNNNGG 3 cut(s) 599, 768, 989
BsmAI GTCTC 2 cut(s) 405, 700
Bsp1286I GDGCHC 2 cut(s) 333, 503
Bsp1407I TGTACA 1 cut(s) 1093
Bsp143I GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
Bsp1720I GCTNAGC 1 cut(s) 792
BspACI CCGC 2 cut(s) 227, 789
BspCNI CTCAG 2 cut(s) 409, 784
BspHI TCATGA 2 cut(s) 319, 325
BspPI GGATC 1 cut(s) 1134
BsrDI GCAATG 1 cut(s) 810
BsrGI TGTACA 1 cut(s) 1093
BsrI ACTGG 1 cut(s) 722
BssECI CCNNGG 2 cut(s) 371, 749
BssMI GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 371, 749
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 224
BstAUI TGTACA 1 cut(s) 1093
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 3 cut(s) 396, 620, 792
BstF5I GGATG 6 cut(s) 346, 406, 418, 516, 1113, 1144
BstKTI GATC 9 cut(s) 6, 145, 325, 415, 570, 868, 909, 942, 1129
BstMAI GTCTC 2 cut(s) 405, 700
BstMBI GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
BstMWI GCNNNNNNNGC 4 cut(s) 181, 498, 797, 806
BstV1I GCAGC 2 cut(s) 812, 833
BstV2I GAAGAC 2 cut(s) 183, 1044
BstX2I RGATCY 2 cut(s) 939, 1126
BstYI RGATCY 2 cut(s) 939, 1126
BtgZI GCGATG 1 cut(s) 913
BtrI CACGTC 1 cut(s) 1042
BtsCI GGATG 6 cut(s) 346, 406, 418, 516, 1113, 1144
BtsIMutI CAGTG 1 cut(s) 715
Cac8I GCNNGC 1 cut(s) 798
CciI TCATGA 2 cut(s) 319, 325
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 624, 1094
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 8 cut(s) 136, 172, 320, 326, 496, 643, 904, 1018
CviQI GTAC 2 cut(s) 624, 1094
DdeI CTNAG 3 cut(s) 396, 620, 792
DpnI GATC 9 cut(s) 5, 144, 324, 414, 569, 867, 908, 941, 1128
DpnII GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 371, 749
Eco24I GRGCYC 2 cut(s) 333, 503
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 842
EcoT14I CCWWGG 2 cut(s) 371, 749
EcoT22I ATGCAT 1 cut(s) 905
EcoT38I GRGCYC 2 cut(s) 333, 503
ErhI CCWWGG 2 cut(s) 371, 749
FaeI CATG 8 cut(s) 139, 175, 323, 329, 499, 646, 907, 1021
FatI CATG 8 cut(s) 135, 171, 319, 325, 495, 642, 903, 1017
FbaI TGATCA 3 cut(s) 3, 322, 412
Fnu4HI GCNGC 3 cut(s) 227, 801, 822
FokI GGATG 6 cut(s) 333, 393, 405, 503, 1120, 1151
FriOI GRGCYC 2 cut(s) 333, 503
Fsp4HI GCNGC 3 cut(s) 227, 801, 822
FspBI CTAG 3 cut(s) 165, 383, 470
GluI GCNGC 3 cut(s) 227, 801, 822
HapII CCGG 3 cut(s) 356, 888, 998
HgaI GACGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 8 cut(s) 139, 175, 323, 329, 499, 646, 907, 1021
HinfI GANTC 8 cut(s) 198, 295, 386, 634, 923, 931, 1009, 1028
HpaII CCGG 3 cut(s) 356, 888, 998
Hpy166II GTNNAC 1 cut(s) 1094
Hpy188I TCNGA 4 cut(s) 300, 487, 541, 672
Hpy8I GTNNAC 1 cut(s) 1094
Hpy99I CGWCG 2 cut(s) 226, 679
HpyAV CCTTC 6 cut(s) 254, 432, 842, 978, 1076, 1122
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 1 cut(s) 1041
HpyCH4V TGCA 2 cut(s) 175, 903
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 498, 797, 806
HpyF3I CTNAG 3 cut(s) 396, 620, 792
HpySE526I ACGT 1 cut(s) 1041
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 8 cut(s) 139, 175, 323, 329, 499, 646, 907, 1021
Ksp22I TGATCA 3 cut(s) 3, 322, 412
Kzo9I GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
LmnI GCTCC 1 cut(s) 1000
Lsp1109I GCAGC 2 cut(s) 812, 833
LweI GCATC 3 cut(s) 890, 1098, 1129
MaeI CTAG 3 cut(s) 165, 383, 470
MaeII ACGT 1 cut(s) 1041
MaeIII GTNAC 1 cut(s) 959
MalI GATC 9 cut(s) 5, 144, 324, 414, 569, 867, 908, 941, 1128
MboI GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
MfeI CAATTG 1 cut(s) 1097
MflI RGATCY 2 cut(s) 939, 1126
MhlI GDGCHC 2 cut(s) 333, 503
MluCI AATT 4 cut(s) 33, 77, 842, 1097
MlyI GAGTC 4 cut(s) 289, 628, 932, 1037
Mph1103I ATGCAT 1 cut(s) 905
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 4 cut(s) 32, 80, 453, 870
MslI CAYNNNNRTG 2 cut(s) 324, 1022
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 3 cut(s) 356, 888, 998
MunI CAATTG 1 cut(s) 1097
MwoI GCNNNNNNNGC 4 cut(s) 181, 498, 797, 806
NdeII GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
NlaIII CATG 8 cut(s) 139, 175, 323, 329, 499, 646, 907, 1021
NmeAIII GCCGAG 1 cut(s) 753
NsiI ATGCAT 1 cut(s) 905
PagI TCATGA 2 cut(s) 319, 325
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 4 cut(s) 198, 386, 931, 1009
PkrI GCNGC 3 cut(s) 228, 802, 823
PleI GAGTC 4 cut(s) 289, 628, 931, 1036
PpsI GAGTC 4 cut(s) 289, 628, 931, 1036
Psp124BI GAGCTC 1 cut(s) 333
PsrI GAACNNNNNNTAC 4 cut(s) 351, 383, 450, 482
PsuI RGATCY 2 cut(s) 939, 1126
RsaI GTAC 2 cut(s) 625, 1095
RsaNI GTAC 2 cut(s) 624, 1094
RseI CAYNNNNRTG 2 cut(s) 324, 1022
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 4 cut(s) 32, 80, 453, 870
SatI GCNGC 3 cut(s) 227, 801, 822
Sau3AI GATC 9 cut(s) 3, 142, 322, 412, 567, 865, 906, 939, 1126
SchI GAGTC 4 cut(s) 289, 628, 932, 1037
SduI GDGCHC 2 cut(s) 333, 503
SfaNI GCATC 3 cut(s) 890, 1098, 1129
SmiMI CAYNNNNRTG 2 cut(s) 324, 1022
SmlI CTYRAG 2 cut(s) 211, 881
SmoI CTYRAG 2 cut(s) 211, 881
Sse9I AATT 4 cut(s) 33, 77, 842, 1097
SsiI CCGC 2 cut(s) 227, 789
SspI AATATT 1 cut(s) 252
SspMI CTAG 3 cut(s) 165, 383, 470
SstI GAGCTC 1 cut(s) 333
StyI CCWWGG 2 cut(s) 371, 749
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 1 cut(s) 1044
TaqI TCGA 3 cut(s) 221, 293, 596
TasI AATT 4 cut(s) 33, 77, 842, 1097
TatI WGTACW 1 cut(s) 1093
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 4 cut(s) 198, 386, 931, 1009
Tru1I TTAA 4 cut(s) 32, 80, 453, 870
Tru9I TTAA 4 cut(s) 32, 80, 453, 870
TscAI CASTG 1 cut(s) 722
TseI GCWGC 2 cut(s) 800, 821
TspDTI ATGAA 7 cut(s) 82, 160, 281, 335, 659, 1034, 1064
TspRI CASTG 1 cut(s) 722
XapI RAATTY 1 cut(s) 842
XbaI TCTAGA 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 3 cut(s) 165, 383, 470
Zsp2I ATGCAT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.