Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016683

Physical Location & Seq

Genomic Coordinates Reverse (-)

692542 .. 694269

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGATGGTAAGTTTCCCAAGTTGGAAACCTTCGTAGCAAAGCAATTGCCATCTTATTTTTCAAGAATGGCAAGTGATAATGGATCAAATTTGATTGGTGATCCAGCCATTTGGTGTGGCAGTGTATCAAAATCATCACTGTCACCAGAGTCTAGTAGTTCTTCAACAGAGGAGTTTTCTTCTTCTGGTTCCAATTTGATTGACAACATGCCTGGATTGACCAAAAGTCCATTTGTTCCTGTAAATTTCTTGGATACATTTCCTCAGCTGAGTAGAGTTCAAGAGCCAAATCTGTTAGATCCTTCATCATTATCATCATCTTCGTCGTCCACGCAAGTTGAAGTTGTAGACTCACTTGGCAAGACCAAAGGGTGTGATGAGCCTAGTATGTTCCCCTATTTATCAATCCCTTCATTTCCTACTCCTCAAGTAATCGACCAAATTCAGCGTCAACCGGGCATGATTGAGTGGCTTAAATTGAACCAAAATTTAGCAAGCCATTCATCTAAAGGCTTCAATGATTACTGGCTAAGCACAACGAAGACGCAGCCAATGAAACACACTGGAAGGTCATCAAGATTGCAGCAGCAGATCAATCAACACCGCAAGCAGCCTCATAACAATTTGTCATCAGCAGCATCAACACCAGGGAAGCTATTTAGAGGAGTTAGGCAAAGGCATTGGGGGAAATGGGTGGCTGAGATTCGATTACCAAGAAACCGAGCAAGGGTTTGGTTGGGGACTTTTGACACAGCTGAGGAGGCTGCCATGGCATATGACACAGCCGCCTACATGTTGCGTGGCGAGCATGCGCATTTGAATTTCCCAGATTTGAAGCATCAACTTAAGGCCAATGCTTTGAAAGGAACCACAGCTGCTCTGCTTGAAGCAAAGTTACAAGCAATTACTTCATCACAAGCACATCAGAAGGCCATCATGGAGTCCAAATCATCACAATTAGCATCACCAAACAAGCACTCAGCTGATGATCATGATGATCACAAGTACTCAAATCTCATGATCAATAGTAATTTCAGCCAAAACCCAACAAGAAAAGAGTGGCAGTTTGGATTGGAGAGCAAAGTTGGATCTGATCATCAGGTGGTAATTGAAAGCAAGAAAAGCAAGCAGGATTTAGTATCAGCAGATGTGGATGCTGTTCAGCTAAGTAGAATGCCTTCTTTGGACATGGACATGATATGGGATGCTCTTCTGGTTTCTGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

410

Amino Acids

45.35

Weight (kDa)

7.81

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13620
malus_domestica	MD04G1009000.v1.1
prunus_persica	Prupe.1G008400_v2.0.a1
pyrus_communis	pycom04g00700
rosa_chinensis	RchiOBHm_Chr4g0415231
rosa_laevigata	RLG00000008088
rosa_multiflora	Rmu_sc0001421.1_g000007
rosa_roxburghii	Rroxscaffold_5G00359040
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG193100 Rh4BG191500 Rh4CG204200 Rh4DG191000
rosa_wichuraiana	Rw4G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	2 cut(s)	604, 786
AclWI	GGATC	4 cut(s)	91, 95, 293, 1096
AcsI	RAATTY	5 cut(s)	88, 244, 441, 487, 820
AfaI	GTAC	1 cut(s)	1007
AfiI	CCNNNNNNNGG	1 cut(s)	727
AflII	CTTAAG	1 cut(s)	845
AflIII	ACRYGT	1 cut(s)	792
AhdI	GACNNNNNGTC	1 cut(s)	225
AjnI	CCWGG	2 cut(s)	211, 646
AluBI	AGCT	6 cut(s)	268, 655, 755, 875, 983, 1165
AluI	AGCT	6 cut(s)	268, 655, 755, 875, 983, 1165
AlwI	GGATC	4 cut(s)	91, 95, 293, 1096
AoxI	GGCC	2 cut(s)	849, 930
ApeKI	GCWGC	7 cut(s)	547, 583, 586, 610, 635, 764, 875
ApoI	RAATTY	5 cut(s)	88, 244, 441, 487, 820
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
Asp700I	GAANNNNTTC	1 cut(s)	1177
AspLEI	GCGC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	3 cut(s)	110, 135, 957
BarI	GAAGNNNNNNTAC	4 cut(s)	879, 911, 1162, 1194
BbsI	GAAGAC	1 cut(s)	548
BbvCI	CCTCAGC	2 cut(s)	264, 756
BbvI	GCAGC	7 cut(s)	559, 595, 598, 622, 647, 751, 862
BccI	CCATC	2 cut(s)	58, 941
BciT130I	CCWGG	2 cut(s)	213, 648
BciVI	GTATCC	1 cut(s)	247
BclI	TGATCA	4 cut(s)	988, 997, 1020, 1093
BcnI	CCSGG	1 cut(s)	456
BfaI	CTAG	2 cut(s)	153, 384
BfrI	CTTAAG	1 cut(s)	845
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	8 cut(s)	548, 584, 587, 611, 636, 765, 786, 876
BlpI	GCTNAGC	1 cut(s)	530
BlsI	GCNGC	8 cut(s)	549, 585, 588, 612, 637, 766, 787, 877
BmcAI	AGTACT	1 cut(s)	1007
Bme1390I	CCNGG	3 cut(s)	213, 456, 648
BmeRI	GACNNNNNGTC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	190, 868
BmrFI	CCNGG	3 cut(s)	213, 456, 648
BmsI	GCATC	5 cut(s)	647, 847, 971, 1144, 1195
BpiI	GAAGAC	1 cut(s)	548
Bpu10I	CCTNAGC	2 cut(s)	264, 756
Bpu1102I	GCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	647, 768
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse1I	ACTGG	2 cut(s)	530, 568
BseBI	CCWGG	2 cut(s)	213, 648
BseDI	CCNNGG	2 cut(s)	647, 768
BseGI	GGATG	3 cut(s)	10, 1159, 1210
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMII	CTCAG	5 cut(s)	260, 278, 690, 747, 993
BseNI	ACTGG	2 cut(s)	530, 568
BseRI	GAGGAG	4 cut(s)	185, 414, 678, 773
BseXI	GCAGC	7 cut(s)	559, 595, 598, 622, 647, 751, 862
BshFI	GGCC	2 cut(s)	851, 932
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	1 cut(s)	1179
BsnI	GGCC	2 cut(s)	851, 932
Bsp143I	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
Bsp1720I	GCTNAGC	1 cut(s)	530
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	2 cut(s)	604, 786
BspANI	GGCC	2 cut(s)	851, 932
BspCNI	CTCAG	5 cut(s)	261, 277, 691, 748, 992
BspHI	TCATGA	2 cut(s)	991, 1017
BspLI	GGNNCC	2 cut(s)	190, 868
BspPI	GGATC	4 cut(s)	91, 95, 293, 1096
BspQI	GCTCTTC	1 cut(s)	1215
BspTI	CTTAAG	1 cut(s)	845
BsrI	ACTGG	2 cut(s)	530, 568
BssECI	CCNNGG	2 cut(s)	647, 768
BssMI	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	2 cut(s)	213, 648
Bst4CI	ACNGT	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	1215
BstAFI	CTTAAG	1 cut(s)	845
BstC8I	GCNNGC	5 cut(s)	496, 608, 806, 810, 1127
BstDEI	CTNAG	7 cut(s)	264, 269, 530, 699, 756, 979, 1166
BstDSI	CCRYGG	1 cut(s)	768
BstF5I	GGATG	3 cut(s)	10, 1159, 1210
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	9 cut(s)	86, 103, 301, 594, 991, 1000, 1023, 1091, 1096
BstMBI	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
BstMWI	GCNNNNNNNGC	4 cut(s)	761, 770, 805, 1122
BstNI	CCWGG	2 cut(s)	213, 648
BstNSI	RCATGY	3 cut(s)	211, 796, 812
BstSCI	CCNGG	3 cut(s)	211, 454, 646
BstV1I	GCAGC	7 cut(s)	559, 595, 598, 622, 647, 751, 862
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	298, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	298, 1088
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	851, 932
BtgI	CCRYGG	1 cut(s)	768
BtsCI	GGATG	3 cut(s)	10, 1159, 1210
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	127, 137, 561
Cac8I	GCNNGC	5 cut(s)	496, 608, 806, 810, 1127
CciI	TCATGA	2 cut(s)	991, 1017
CfoI	GCGC	1 cut(s)	814
CseI	GACGC	2 cut(s)	437, 553
Csp6I	GTAC	1 cut(s)	1006
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviQI	GTAC	1 cut(s)	1006
DdeI	CTNAG	7 cut(s)	264, 269, 530, 699, 756, 979, 1166
DpnI	GATC	9 cut(s)	85, 102, 300, 593, 990, 999, 1022, 1090, 1095
DpnII	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
DriI	GACNNNNNGTC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	1215
Eam1105I	GACNNNNNGTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	1215
Eco130I	CCWWGG	1 cut(s)	768
EcoRII	CCWGG	2 cut(s)	211, 646
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaqI	GGGAC	1 cut(s)	754
FauNDI	CATATG	1 cut(s)	775
FbaI	TGATCA	4 cut(s)	988, 997, 1020, 1093
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	8 cut(s)	548, 584, 587, 611, 636, 765, 786, 876
FokI	GGATG	3 cut(s)	17, 1166, 1217
Fsp4HI	GCNGC	8 cut(s)	548, 584, 587, 611, 636, 765, 786, 876
FspAI	RTGCGCAY	1 cut(s)	813
FspBI	CTAG	2 cut(s)	153, 384
FspI	TGCGCA	1 cut(s)	813
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	8 cut(s)	548, 584, 587, 611, 636, 765, 786, 876
HaeIII	GGCC	2 cut(s)	851, 932
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	2 cut(s)	437, 553
HhaI	GCGC	1 cut(s)	814
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HincII	GTYRAC	1 cut(s)	452
HindII	GTYRAC	1 cut(s)	452
HinfI	GANTC	5 cut(s)	149, 350, 703, 941, 1223
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	3 cut(s)	110, 135, 957
Hpy166II	GTNNAC	3 cut(s)	330, 349, 452
Hpy188I	TCNGA	3 cut(s)	927, 1093, 1222
Hpy188III	TCNNGA	5 cut(s)	63, 281, 576, 992, 1018
Hpy8I	GTNNAC	3 cut(s)	330, 349, 452
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	6 cut(s)	40, 312, 420, 561, 922, 1188
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	583
HpyF10VI	GCNNNNNNNGC	4 cut(s)	761, 770, 805, 1122
HpyF3I	CTNAG	7 cut(s)	264, 269, 530, 699, 756, 979, 1166
HspAI	GCGC	1 cut(s)	812
Ksp22I	TGATCA	4 cut(s)	988, 997, 1020, 1093
Kzo9I	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
LguI	GCTCTTC	1 cut(s)	1215
Lsp1109I	GCAGC	7 cut(s)	559, 595, 598, 622, 647, 751, 862
LweI	GCATC	5 cut(s)	647, 847, 971, 1144, 1195
MaeI	CTAG	2 cut(s)	153, 384
MaeIII	GTNAC	2 cut(s)	141, 894
MalI	GATC	9 cut(s)	85, 102, 300, 593, 990, 999, 1022, 1090, 1095
MboI	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
MboII	GAAGA	6 cut(s)	153, 171, 174, 312, 553, 1202
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	2 cut(s)	298, 1088
MlyI	GAGTC	3 cut(s)	158, 344, 950
MmeI	TCCRAC	1 cut(s)	1066
MnlI	CCTC	7 cut(s)	163, 273, 435, 624, 656, 751, 754
MroXI	GAANNNNTTC	1 cut(s)	1177
MseI	TTAA	2 cut(s)	474, 846
MslI	CAYNNNNRTG	1 cut(s)	1193
MspA1I	CMGCKG	4 cut(s)	268, 755, 875, 983
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	3 cut(s)	213, 456, 648
MunI	CAATTG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	1179
MvaI	CCWGG	2 cut(s)	213, 648
MwoI	GCNNNNNNNGC	4 cut(s)	761, 770, 805, 1122
NciI	CCSGG	1 cut(s)	456
NcoI	CCATGG	1 cut(s)	768
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
NlaIV	GGNNCC	2 cut(s)	190, 868
NmuCI	GTSAC	1 cut(s)	141
NsbI	TGCGCA	1 cut(s)	813
NspI	RCATGY	3 cut(s)	211, 796, 812
PaeI	GCATGC	1 cut(s)	812
PagI	TCATGA	2 cut(s)	991, 1017
PciI	ACATGT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	1215
PctI	GAATGC	1 cut(s)	1179
PdmI	GAANNNNTTC	1 cut(s)	1177
PfeI	GAWTC	2 cut(s)	703, 1223
PkrI	GCNGC	8 cut(s)	549, 585, 588, 612, 637, 766, 787, 877
PleI	GAGTC	3 cut(s)	157, 344, 949
PpsI	GAGTC	3 cut(s)	157, 344, 949
PscI	ACATGT	1 cut(s)	792
Psp6I	CCWGG	2 cut(s)	211, 646
PspGI	CCWGG	2 cut(s)	211, 646
PspN4I	GGNNCC	2 cut(s)	190, 868
PsuI	RGATCY	2 cut(s)	298, 1088
PvuII	CAGCTG	4 cut(s)	268, 755, 875, 983
RsaI	GTAC	1 cut(s)	1007
RsaNI	GTAC	1 cut(s)	1006
RseI	CAYNNNNRTG	1 cut(s)	1193
SapI	GCTCTTC	1 cut(s)	1215
SaqAI	TTAA	2 cut(s)	474, 846
SatI	GCNGC	8 cut(s)	548, 584, 587, 611, 636, 765, 786, 876
Sau3AI	GATC	9 cut(s)	83, 100, 298, 591, 988, 997, 1020, 1088, 1093
ScaI	AGTACT	1 cut(s)	1007
SchI	GAGTC	3 cut(s)	158, 344, 950
ScrFI	CCNGG	3 cut(s)	213, 456, 648
SetI	ASST	9 cut(s)	32, 270, 572, 657, 757, 877, 985, 1104, 1167
SfaNI	GCATC	5 cut(s)	647, 847, 971, 1144, 1195
SmiMI	CAYNNNNRTG	1 cut(s)	1193
SmlI	CTYRAG	2 cut(s)	426, 845
SmoI	CTYRAG	2 cut(s)	426, 845
SphI	GCATGC	1 cut(s)	812
SsiI	CCGC	2 cut(s)	604, 786
SspMI	CTAG	2 cut(s)	153, 384
StyD4I	CCNGG	3 cut(s)	211, 454, 646
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	435, 706
TatI	WGTACW	1 cut(s)	1005
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	2 cut(s)	703, 1223
Tru1I	TTAA	2 cut(s)	474, 846
Tru9I	TTAA	2 cut(s)	474, 846
TscAI	CASTG	3 cut(s)	127, 144, 568
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	7 cut(s)	547, 583, 586, 610, 635, 764, 875
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	6 cut(s)	294, 402, 492, 569, 900, 1215
TspRI	CASTG	3 cut(s)	127, 144, 568
Vha464I	CTTAAG	1 cut(s)	845
XapI	RAATTY	5 cut(s)	88, 244, 441, 487, 820
XceI	RCATGY	3 cut(s)	211, 796, 812
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	1177
XspI	CTAG	2 cut(s)	153, 384
ZrmI	AGTACT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.