AT4G14145

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014263
Physical Location & Seq
Reverse (-)
8152248 .. 8153678
1431 bp
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UTR
Exon/CDS
Intron
AT4G14145.1

Sequence Viewer

Length: 405 bp
ATGACAACAATCGAAACCGGTCAGAAAACTCAAAAGTCTTCTCCTTCCGGTTCTGGTACTACCCCTACTGGTACTCTTAAGCAGTCATCAGCATCGTTTAAAAGGTGGGGAAGGAGACACCCGTTTGTAAGATATGGACTTCCGATGATATCTCTCACTGTATTTGGAGCCCTCGGACTCGGCCAACTCCTTCAAGGCAGTAAGGATATTGCAAAGGTAAAAGATGACCAAGAATGGGAGATTATAGAAACAAGAAAGGCACTTTCGAGAACAGGACCTGTCGATGCCTATAAACCTAAAAACACATCCATTGAAGATGAGCTCAAGGCTATGCAAGAGAAGGTGGACATAAACACGTACGAGTACAAGAAAATTCCAAAGCTAAACGAAAGCAAGTCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

134

Amino Acids

14.89

Weight (kDa)

9.63

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX16 PF14138 43 - 130 6.8e-18 Cytochrome c oxidase assembly protein COX16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0014263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14145
fragaria_vesca FvH4_7g19210 FvH4_7g19210
malus_domestica MD01G1107500.v1.1
prunus_persica Prupe.2G212200_v2.0.a1
pyrus_communis pycom01g13440
rosa_chinensis RchiOBHm_Chr1g0363061
rosa_laevigata RLG00000027599
rosa_roxburghii Rroxscaffold_4G00293510
rosa_rugosa Rorug01G0304000 Rorug01G0304000 Rorug01G0304100
rosa_samantha Rh1AG313100 Rh1BG276300 Rh1CG293100 Rh1DG307000
rosa_wichuraiana Rw1G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 372
AfaI GTAC 4 cut(s) 58, 73, 359, 365
AfiI CCNNNNNNNGG 1 cut(s) 235
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 354
AgeI ACCGGT 1 cut(s) 17
AgsI TTSAA 2 cut(s) 194, 314
AluBI AGCT 2 cut(s) 322, 382
AluI AGCT 2 cut(s) 322, 382
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 372
AsiGI ACCGGT 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 2 cut(s) 172, 324
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 109
BfrI CTTAAG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 169
BmsI GCATC 2 cut(s) 101, 274
BpiI GAAGAC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 172
BsaWI WCCGGW 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 73
BshFI GGCC 1 cut(s) 183
BshTI ACCGGT 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 18, 48
BsiWI CGTACG 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 172, 324
BspANI GGCC 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 169
BspTI CTTAAG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 357
BstF5I GGATG 1 cut(s) 305
BstMAI GTCTC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 4 cut(s) 57, 72, 358, 364
CspAI ACCGGT 1 cut(s) 17
CviJI RGCY 5 cut(s) 170, 183, 322, 329, 382
CviKI_1 RGCY 5 cut(s) 170, 183, 322, 329, 382
CviQI GTAC 4 cut(s) 57, 72, 358, 364
DraI TTTAAA 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 172, 324
Eco32I GATATC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 275
EcoRV GATATC 1 cut(s) 150
EcoT38I GRGCYC 2 cut(s) 172, 324
FaiI YATR 5 cut(s) 135, 245, 291, 332, 350
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 2 cut(s) 172, 324
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 18, 48
HinfI GANTC 1 cut(s) 177
HpaII CCGG 2 cut(s) 18, 48
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 24, 144, 176
Hpy188III TCNNGA 1 cut(s) 267
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 4 cut(s) 54, 105, 200, 334
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 2 cut(s) 212, 334
HpySE526I ACGT 1 cut(s) 356
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 6 cut(s) 31, 39, 54, 61, 258, 291
LweI GCATC 2 cut(s) 101, 274
MaeII ACGT 1 cut(s) 356
MboII GAAGA 2 cut(s) 30, 326
MhlI GDGCHC 2 cut(s) 172, 324
MluCI AATT 1 cut(s) 372
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 1 cut(s) 182
MseI TTAA 3 cut(s) 78, 99, 403
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 2 cut(s) 18, 48
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 159
Pfl23II CGTACG 1 cut(s) 357
PinAI ACCGGT 1 cut(s) 17
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Ppu21I YACGTR 1 cut(s) 357
PpuMI RGGWCCY 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 275
PspLI CGTACG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 278
RsaI GTAC 4 cut(s) 58, 73, 359, 365
RsaNI GTAC 4 cut(s) 57, 72, 358, 364
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 78, 99, 403
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 171
SduI GDGCHC 2 cut(s) 172, 324
SetI ASST 8 cut(s) 107, 219, 280, 298, 324, 345, 359, 384
SfaNI GCATC 2 cut(s) 101, 274
SinI GGWCC 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 77, 323
SmoI CTYRAG 2 cut(s) 77, 323
Sse9I AATT 1 cut(s) 372
SstI GAGCTC 1 cut(s) 324
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 359
TaqI TCGA 4 cut(s) 12, 266, 282, 398
TasI AATT 1 cut(s) 372
TatI WGTACW 1 cut(s) 363
Tru1I TTAA 3 cut(s) 78, 99, 403
Tru9I TTAA 3 cut(s) 78, 99, 403
TscAI CASTG 1 cut(s) 163
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.