pycom01g13440

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014263
Physical Location & Seq
Reverse (-)
13886589 .. 13887055
467 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13440.2

Sequence Viewer

Length: 369 bp
ATGAACACGGCGATGACAAGCGTCAGCAGAACAAAAGCCGGCGCGGCTGCGATTAAATCATCGACGTACAAGCGATGGGGGCGGAGACATCCGTTTATCCGATACGGCCTTCCGATGATCTCGCTCACCGTGTGCGGCGCGGTGGGGCTCGGTCACATGATACAAGGAAGCAAGGACATCGCGAAGGTGAAGGACGATCAGGAGTGGGAGATCATCGAGACCCGAAAAGCACTTTCCAGAACGGGGCCCGTCGACGCCTACAAGCCGAAGAAGACATCGCTCGAGGAAGAGCTCAAGGTTTTGCAGCAGAAGGTGGACATTAACAAGTACGATTACAAGCCGATTCCTCGCCCAAGTGAAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

123

Amino Acids

13.69

Weight (kDa)

9.83

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14145
fragaria_vesca FvH4_7g19210 FvH4_7g19210
malus_domestica MD01G1107500.v1.1
prunus_persica Prupe.2G212200_v2.0.a1
pyrus_communis pycom01g13440
rosa_chinensis RchiOBHm_Chr1g0363061
rosa_laevigata RLG00000027599
rosa_roxburghii Rroxscaffold_4G00293510
rosa_rugosa Rorug01G0304000 Rorug01G0304000 Rorug01G0304100
rosa_samantha Rh1AG313100 Rh1BG276300 Rh1CG293100 Rh1DG307000
rosa_wichuraiana Rw1G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AccII CGCG 3 cut(s) 44, 140, 182
AciI CCGC 4 cut(s) 44, 82, 135, 140
AcyI GRCGYC 1 cut(s) 255
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 2 cut(s) 68, 329
AfiI CCNNNNNNNGG 2 cut(s) 243, 359
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 79, 212
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 106, 245
ApaI GGGCCC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 47, 304
AspLEI GCGC 2 cut(s) 44, 140
AspS9I GGNCC 2 cut(s) 245, 246
AsuHPI GGTGA 2 cut(s) 118, 199
AvaI CYCGRG 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 249
BanII GRGCYC 3 cut(s) 150, 249, 294
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 34, 316
BccI CCATC 1 cut(s) 69
BceAI ACGGC 2 cut(s) 24, 121
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcoDI GTCTC 2 cut(s) 79, 212
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 4 cut(s) 45, 48, 136, 305
BlsI GCNGC 4 cut(s) 46, 49, 137, 306
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 245, 246
BmiI GGNNCC 2 cut(s) 246, 247
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 359
Bse118I RCCGGY 1 cut(s) 38
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 243, 359
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 2 cut(s) 34, 316
Bsh1236I CGCG 3 cut(s) 44, 140, 182
BshFI GGCC 2 cut(s) 108, 247
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 243, 359
BsmAI GTCTC 2 cut(s) 79, 212
BsnI GGCC 2 cut(s) 108, 247
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 281
Bsp120I GGGCCC 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 150, 249, 294
Bsp143I GATC 3 cut(s) 117, 196, 210
Bsp68I TCGCGA 1 cut(s) 182
BspACI CCGC 4 cut(s) 44, 82, 135, 140
BspANI GGCC 2 cut(s) 108, 247
BspFNI CGCG 3 cut(s) 44, 140, 182
BspLI GGNNCC 2 cut(s) 246, 247
BspQI GCTCTTC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssMI GATC 3 cut(s) 117, 196, 210
BssNI GRCGYC 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 3 cut(s) 44, 140, 182
BstHHI GCGC 2 cut(s) 44, 140
BstKTI GATC 3 cut(s) 120, 199, 213
BstMAI GTCTC 2 cut(s) 79, 212
BstMBI GATC 3 cut(s) 117, 196, 210
BstMWI GCNNNNNNNGC 2 cut(s) 44, 79
BstPAI GACNNNNGTC 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 249
BstUI CGCG 3 cut(s) 44, 140, 182
BstV1I GCAGC 2 cut(s) 34, 316
BstV2I GAAGAC 1 cut(s) 278
BsuRI GGCC 2 cut(s) 108, 247
BtgZI GCGATG 4 cut(s) 26, 88, 163, 261
BtsCI GGATG 1 cut(s) 88
BtuMI TCGCGA 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 2 cut(s) 44, 140
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 245, 246
CseI GACGC 2 cut(s) 10, 263
Csp6I GTAC 2 cut(s) 67, 328
CviAII CATG 1 cut(s) 157
CviJI RGCY 8 cut(s) 38, 47, 108, 148, 247, 265, 292, 340
CviKI_1 RGCY 8 cut(s) 38, 47, 108, 148, 247, 265, 292, 340
CviQI GTAC 2 cut(s) 67, 328
DpnI GATC 3 cut(s) 119, 198, 212
DpnII GATC 3 cut(s) 117, 196, 210
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 3 cut(s) 150, 249, 294
Eco31I GGTCTC 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 245
EcoT38I GRGCYC 3 cut(s) 150, 249, 294
FaeI CATG 1 cut(s) 160
FaiI YATR 1 cut(s) 158
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 45, 48, 136, 305
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 3 cut(s) 150, 249, 294
Fsp4HI GCNGC 4 cut(s) 45, 48, 136, 305
GlaI GCGC 2 cut(s) 43, 139
GluI GCNGC 4 cut(s) 45, 48, 136, 305
HaeIII GGCC 2 cut(s) 108, 247
HapII CCGG 1 cut(s) 39
HgaI GACGC 2 cut(s) 10, 263
HhaI GCGC 2 cut(s) 44, 140
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 42, 138
HinP1I GCGC 2 cut(s) 42, 138
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 118, 199
Hpy166II GTNNAC 2 cut(s) 253, 316
Hpy188I TCNGA 2 cut(s) 101, 114
Hpy188III TCNNGA 4 cut(s) 181, 200, 217, 237
Hpy8I GTNNAC 2 cut(s) 253, 316
Hpy99I CGWCG 3 cut(s) 67, 254, 257
HpyAV CCTTC 5 cut(s) 119, 178, 184, 304, 353
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 79
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 42, 138
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 3 cut(s) 117, 196, 210
LguI GCTCTTC 1 cut(s) 282
LpnPI CCDG 3 cut(s) 52, 185, 250
Lsp1109I GCAGC 2 cut(s) 34, 316
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 152
MalI GATC 3 cut(s) 119, 198, 212
MboI GATC 3 cut(s) 117, 196, 210
MboII GAAGA 3 cut(s) 280, 283, 299
MhlI GDGCHC 3 cut(s) 150, 249, 294
MnlI CCTC 2 cut(s) 277, 357
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 2 cut(s) 54, 321
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 39
MvnI CGCG 3 cut(s) 44, 140, 182
MwoI GCNNNNNNNGC 2 cut(s) 44, 79
NaeI GCCGGC 1 cut(s) 40
NdeII GATC 3 cut(s) 117, 196, 210
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 246, 247
NmuCI GTSAC 1 cut(s) 152
NruI TCGCGA 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 46, 49, 137, 306
PshAI GACNNNNGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 246, 247
PspOMI GGGCCC 1 cut(s) 245
PspPI GGNCC 2 cut(s) 245, 246
PspXI VCTCGAGB 1 cut(s) 281
RruI TCGCGA 1 cut(s) 182
RsaI GTAC 2 cut(s) 68, 329
RsaNI GTAC 2 cut(s) 67, 328
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 294
SalI GTCGAC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 54, 321
SatI GCNGC 4 cut(s) 45, 48, 136, 305
Sau3AI GATC 3 cut(s) 117, 196, 210
Sau96I GGNCC 2 cut(s) 245, 246
SduI GDGCHC 3 cut(s) 150, 249, 294
SetI ASST 5 cut(s) 68, 189, 294, 300, 315
Sfr274I CTCGAG 1 cut(s) 281
SgrDI CGTCGACG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 281, 293
SmoI CTYRAG 2 cut(s) 281, 293
SsiI CCGC 4 cut(s) 44, 82, 135, 140
SstI GAGCTC 1 cut(s) 294
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 68
TaqI TCGA 4 cut(s) 62, 216, 252, 282
TaqII GACCGA 1 cut(s) 140
TauI GCSGC 2 cut(s) 47, 138
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 54, 321
Tru9I TTAA 2 cut(s) 54, 321
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 47, 304
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 81
XhoI CTCGAG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.