Rh1AG313100

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014263
Physical Location & Seq
Reverse (-)
54609998 .. 54610455
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG313100.1

Sequence Viewer

Length: 372 bp
ATGGTTTTAGTTGAAGAGATGACAAGCGTGGACAGAGCAAAAGTAGAGTCGGCGAATAAATCGTTCAAGAGATGGGGCAGGAGGCACCCGTTCATCCGGTACGGACTTCCGATGATCTCCCTCACCGTGTTCGGCGCCGTCGGCCTCGCCCATCTCATCCAAGGCAGCAAAGACATCGCCAAGTTCAAAGACGACCAGGAATGGGAGATCATCGAGACCCGCAAAGCTCTTTCCAGAACCGGACCTCTAAACGCCTACAACCCCAAGAAGATTTCACTCGACCAAGAGCTCAAGGCTCTGCAGGAGAAGGTGGACATTAACAACTACGATTACAAGAGGATTCCGCGACCAAATGAAGATAAGTCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

9.48

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX16 PF14138 32 - 119 1.2e-20 Cytochrome c oxidase assembly protein COX16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14145
fragaria_vesca FvH4_7g19210 FvH4_7g19210
malus_domestica MD01G1107500.v1.1
prunus_persica Prupe.2G212200_v2.0.a1
pyrus_communis pycom01g13440
rosa_chinensis RchiOBHm_Chr1g0363061
rosa_laevigata RLG00000027599
rosa_roxburghii Rroxscaffold_4G00293510
rosa_rugosa Rorug01G0304000 Rorug01G0304000 Rorug01G0304100
rosa_samantha Rh1AG313100 Rh1BG276300 Rh1CG293100 Rh1DG307000
rosa_wichuraiana Rw1G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 84, 134
AccII CGCG 1 cut(s) 346
AciI CCGC 2 cut(s) 220, 344
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 3 cut(s) 14, 67, 187
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 2 cut(s) 227, 289
AluI AGCT 2 cut(s) 227, 289
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 165
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 242
BanI GGYRCC 2 cut(s) 84, 134
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 66, 159
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 86, 136
BmrFI CCNGG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 2 cut(s) 96, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 93, 156
BseLI CCNNNNNNNGG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 2 cut(s) 84, 134
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 97, 240
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 114, 207
BspACI CCGC 2 cut(s) 220, 344
BspANI GGCC 1 cut(s) 144
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 86, 136
BspMAI CTGCAG 1 cut(s) 303
BspT107I GGYRCC 2 cut(s) 84, 134
BspTNI GGTCTC 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 114, 207
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 135
BstF5I GGATG 2 cut(s) 93, 156
BstFNI CGCG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 117, 210
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 2 cut(s) 114, 207
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 299
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 93, 156
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 4 cut(s) 144, 227, 289, 296
CviKI_1 RGCY 4 cut(s) 144, 227, 289, 296
CviQI GTAC 1 cut(s) 100
DinI GGCGCC 1 cut(s) 136
DpnI GATC 2 cut(s) 116, 209
DpnII GATC 2 cut(s) 114, 207
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 160
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 2 cut(s) 80, 143
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 1 cut(s) 370
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 97, 240
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 135
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 47, 340
HpaII CCGG 2 cut(s) 97, 240
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 31, 313
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 3 cut(s) 67, 214, 234
Hpy8I GTNNAC 2 cut(s) 31, 313
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 135
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 2 cut(s) 114, 207
LpnPI CCDG 7 cut(s) 64, 110, 182, 209, 247, 253, 287
Lsp1109I GCAGC 1 cut(s) 177
MaeI CTAG 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 363
MalI GATC 2 cut(s) 116, 209
MboI GATC 2 cut(s) 114, 207
MboII GAAGA 3 cut(s) 26, 280, 368
MhlI GDGCHC 1 cut(s) 291
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 5 cut(s) 75, 131, 155, 255, 330
MseI TTAA 1 cut(s) 318
MspI CCGG 2 cut(s) 97, 240
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 141
NarI GGCGCC 1 cut(s) 135
NdeII GATC 2 cut(s) 114, 207
NlaIV GGNNCC 2 cut(s) 86, 136
NmuCI GTSAC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 1 cut(s) 55
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 86, 136
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 303
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 2 cut(s) 114, 207
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 291
SetI ASST 4 cut(s) 229, 247, 291, 312
SfcI CTRYAG 1 cut(s) 299
SfoI GGCGCC 1 cut(s) 136
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SsiI CCGC 2 cut(s) 220, 344
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 370
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 213, 279
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 82, 369
TspGWI ACGGA 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 242
XspI CTAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.