Rw1G027740

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014263
Physical Location & Seq
Reverse (-)
55246047 .. 55246486
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027740.1

Sequence Viewer

Length: 354 bp
ATGACAAGCGTGGACAGAGCAAAAGTAGAGTCGGCGAATAAATCGTTCAAGAGATGGGGCAGGAGGCACCCGTTCATCCGGTACGGACTTCCGATGATCTCCCTCACCGTGTTCGGCGCCGTCGGCCTCGCCCATCTCATCCAAGGCAGCAAAGACATCGCCAAGTTCAAAGACGACCAGGAATGGGAGATCATCGAGACCCGCAAAGCTCTTTCCAGAACCGGACCTCTAAACGCCTACAACCCCAAGAAGATTTCACTCGACCAAGAGCTCAAGGCTCTGCAGGAGAAGGTGGACATTAACAACTACGATTACAAGAGGATTCCGCGACCAAATGAAGATAAGTCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

117

Amino Acids

13.53

Weight (kDa)

9.73

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX16 PF14138 26 - 113 1.1e-20 Cytochrome c oxidase assembly protein COX16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14145
fragaria_vesca FvH4_7g19210 FvH4_7g19210
malus_domestica MD01G1107500.v1.1
prunus_persica Prupe.2G212200_v2.0.a1
pyrus_communis pycom01g13440
rosa_chinensis RchiOBHm_Chr1g0363061
rosa_laevigata RLG00000027599
rosa_roxburghii Rroxscaffold_4G00293510
rosa_rugosa Rorug01G0304000 Rorug01G0304000 Rorug01G0304100
rosa_samantha Rh1AG313100 Rh1BG276300 Rh1CG293100 Rh1DG307000
rosa_wichuraiana Rw1G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 66, 116
AccII CGCG 1 cut(s) 328
AciI CCGC 2 cut(s) 202, 326
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 2 cut(s) 49, 169
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 209, 271
AluI AGCT 2 cut(s) 209, 271
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 147
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 224
BanI GGYRCC 2 cut(s) 66, 116
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 48, 141
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 352
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 68, 118
BmrFI CCNGG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 142
BsaWI WCCGGW 2 cut(s) 78, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 75, 138
BseLI CCNNNNNNNGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 328
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 2 cut(s) 66, 116
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 2 cut(s) 79, 222
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 96, 189
BspACI CCGC 2 cut(s) 202, 326
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 68, 118
BspMAI CTGCAG 1 cut(s) 285
BspT107I GGYRCC 2 cut(s) 66, 116
BspTNI GGTCTC 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 96, 189
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 117
BstF5I GGATG 2 cut(s) 75, 138
BstFNI CGCG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 99, 192
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 96, 189
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 281
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 2 cut(s) 75, 138
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 4 cut(s) 126, 209, 271, 278
CviKI_1 RGCY 4 cut(s) 126, 209, 271, 278
CviQI GTAC 1 cut(s) 82
DinI GGCGCC 1 cut(s) 118
DpnI GATC 2 cut(s) 98, 191
DpnII GATC 2 cut(s) 96, 189
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 142
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 2 cut(s) 62, 125
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 352
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 79, 222
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 117
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 2 cut(s) 29, 322
HpaII CCGG 2 cut(s) 79, 222
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 2 cut(s) 13, 295
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 3 cut(s) 49, 196, 216
Hpy8I GTNNAC 2 cut(s) 13, 295
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 117
HspAI GCGC 1 cut(s) 117
KasI GGCGCC 1 cut(s) 116
Kzo9I GATC 2 cut(s) 96, 189
LpnPI CCDG 7 cut(s) 46, 92, 164, 191, 229, 235, 269
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 345
MalI GATC 2 cut(s) 98, 191
MboI GATC 2 cut(s) 96, 189
MboII GAAGA 2 cut(s) 262, 350
MhlI GDGCHC 1 cut(s) 273
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 5 cut(s) 57, 113, 137, 237, 312
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 79, 222
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 123
NarI GGCGCC 1 cut(s) 117
NdeII GATC 2 cut(s) 96, 189
NlaIV GGNNCC 2 cut(s) 68, 118
NmuCI GTSAC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 68, 118
PspPI GGNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 285
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 2 cut(s) 96, 189
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 273
SetI ASST 4 cut(s) 211, 229, 273, 294
SfcI CTRYAG 1 cut(s) 281
SfoI GGCGCC 1 cut(s) 118
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SsiI CCGC 2 cut(s) 202, 326
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 1 cut(s) 352
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 195, 261
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 2 cut(s) 64, 351
TspGWI ACGGA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.