RLG00000027599

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014263
Physical Location & Seq
Forward (+)
13003403 .. 13003826
424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027599

Sequence Viewer

Length: 351 bp
ATGACAAGCGTGGACAAAGCAAAAGTAGAGTCGGCGAAATCGTTCAAGAGATGGGGCAGGAGGCACCCGTTCATCCGGTACGGGCTTCCGATGATCTCCCTCACCGTGTTCGGCGCCGTCGGCCTCGCCCATCTCATCCAAGGCAGCAAAGACATCGCCAAGTTCAAAGACGACCAGGAATGGGAGATCATCGAGACCCGCAAAGCCCTTTCCAGAACCGGACCTCTAAACGCCTACAACCCCAAGAAGATTTCACTCGACCAAGAGCTCAAGGCTTTGCAGGAGAAGGTGGACATTAACAACTACGATTACAAGAGGATTCCGCGCCCAAATGAAGATAAGTCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

117

Amino Acids

13.38

Weight (kDa)

9.69

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX16 PF14138 25 - 112 1e-20 Cytochrome c oxidase assembly protein COX16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14145
fragaria_vesca FvH4_7g19210 FvH4_7g19210
malus_domestica MD01G1107500.v1.1
prunus_persica Prupe.2G212200_v2.0.a1
pyrus_communis pycom01g13440
rosa_chinensis RchiOBHm_Chr1g0363061
rosa_laevigata RLG00000027599
rosa_roxburghii Rroxscaffold_4G00293510
rosa_rugosa Rorug01G0304000 Rorug01G0304000 Rorug01G0304100
rosa_samantha Rh1AG313100 Rh1BG276300 Rh1CG293100 Rh1DG307000
rosa_wichuraiana Rw1G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 63, 113
AccII CGCG 1 cut(s) 325
AciI CCGC 2 cut(s) 199, 323
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 2 cut(s) 46, 166
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 144
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 116, 327
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 221
BanI GGYRCC 2 cut(s) 63, 113
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 45, 138
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 349
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 65, 115
BmrFI CCNGG 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 2 cut(s) 75, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 72, 135
BseLI CCNNNNNNNGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 325
BshFI GGCC 1 cut(s) 123
BshNI GGYRCC 2 cut(s) 63, 113
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 2 cut(s) 76, 219
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 93, 186
BspACI CCGC 2 cut(s) 199, 323
BspANI GGCC 1 cut(s) 123
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 65, 115
BspT107I GGYRCC 2 cut(s) 63, 113
BspTNI GGTCTC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 93, 186
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 114
BstF5I GGATG 2 cut(s) 72, 135
BstFNI CGCG 1 cut(s) 325
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 2 cut(s) 116, 327
BstKTI GATC 2 cut(s) 96, 189
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 93, 186
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 72, 135
CfoI GCGC 2 cut(s) 116, 327
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 5 cut(s) 85, 123, 206, 268, 275
CviKI_1 RGCY 5 cut(s) 85, 123, 206, 268, 275
CviQI GTAC 1 cut(s) 79
DinI GGCGCC 1 cut(s) 115
DpnI GATC 2 cut(s) 95, 188
DpnII GATC 2 cut(s) 93, 186
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 139
FauI CCCGC 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 2 cut(s) 59, 122
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 349
GlaI GCGC 2 cut(s) 115, 326
GluI GCNGC 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 123
HapII CCGG 2 cut(s) 76, 219
HhaI GCGC 2 cut(s) 116, 327
Hin1I GRCGYC 1 cut(s) 114
Hin6I GCGC 2 cut(s) 114, 325
HinP1I GCGC 2 cut(s) 114, 325
HinfI GANTC 2 cut(s) 29, 319
HpaII CCGG 2 cut(s) 76, 219
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 13, 292
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 46, 193, 213
Hpy8I GTNNAC 2 cut(s) 13, 292
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 114
HspAI GCGC 2 cut(s) 114, 325
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 93, 186
LpnPI CCDG 7 cut(s) 43, 89, 161, 188, 226, 232, 266
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 342
MalI GATC 2 cut(s) 95, 188
MboI GATC 2 cut(s) 93, 186
MboII GAAGA 2 cut(s) 259, 347
MhlI GDGCHC 1 cut(s) 270
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 5 cut(s) 54, 110, 134, 234, 309
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 1 cut(s) 297
MspI CCGG 2 cut(s) 76, 219
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 120
NarI GGCGCC 1 cut(s) 114
NdeII GATC 2 cut(s) 93, 186
NlaIV GGNNCC 2 cut(s) 65, 115
NmuCI GTSAC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 65, 115
PspPI GGNCC 1 cut(s) 221
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 93, 186
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 270
SetI ASST 3 cut(s) 226, 270, 291
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SsiI CCGC 2 cut(s) 199, 323
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 349
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 192, 258
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 61, 348
VpaK11BI GGWCC 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.