Rh1DG307000

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014263
Physical Location & Seq
Reverse (-)
53481299 .. 53482426
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG307000.1

Sequence Viewer

Length: 363 bp
ATGAGTGCAGCGATGACAAGTGTGGACAGAGCAAAAGTAGAGTCGGCGAAATCGTTCAAGAGATGGGGCAGGAGGCACCCGTTCATCCGGTACGGACTTCCGATGATCTCCCTCACCGTGTTCGGCGCCGTCGGCCTCGCCCATCTCATCCAAGGCACCAAAGACATCGCCAAGTTCAAAGACGACCAGGAATGGGAGATCATCGAGACCCGCAAAGCCCTTTCCAGAACCGGACCTCTAAACGCCTACAACCCCAAGAAGATTTCACTCGACCAAGAGCTCAAGGCTTTGCAGGAGAAGGTGGACATTAACAACTACGATTACAAGAGGATTCCGCGACCAAATGAAGACAAGTCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

120

Amino Acids

13.79

Weight (kDa)

9.73

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX16 PF14138 29 - 116 2.3e-20 Cytochrome c oxidase assembly protein COX16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14145
fragaria_vesca FvH4_7g19210 FvH4_7g19210
malus_domestica MD01G1107500.v1.1
prunus_persica Prupe.2G212200_v2.0.a1
pyrus_communis pycom01g13440
rosa_chinensis RchiOBHm_Chr1g0363061
rosa_laevigata RLG00000027599
rosa_roxburghii Rroxscaffold_4G00293510
rosa_rugosa Rorug01G0304000 Rorug01G0304000 Rorug01G0304100
rosa_samantha Rh1AG313100 Rh1BG276300 Rh1CG293100 Rh1DG307000
rosa_wichuraiana Rw1G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 75, 125, 155
AccII CGCG 1 cut(s) 337
AciI CCGC 2 cut(s) 211, 335
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 2 cut(s) 58, 178
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 233
BanI GGYRCC 3 cut(s) 75, 125, 155
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 57, 150
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 361
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 3 cut(s) 77, 127, 157
BmrFI CCNGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 2 cut(s) 87, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 2 cut(s) 84, 147
BseLI CCNNNNNNNGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 3 cut(s) 75, 125, 155
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 88, 231
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 105, 198
BspACI CCGC 2 cut(s) 211, 335
BspANI GGCC 1 cut(s) 135
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 77, 127, 157
BspT107I GGYRCC 3 cut(s) 75, 125, 155
BspTNI GGTCTC 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 2 cut(s) 105, 198
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 126
BstF5I GGATG 2 cut(s) 84, 147
BstFNI CGCG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 108, 201
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 105, 198
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 135
BtgZI GCGATG 2 cut(s) 26, 151
BtsCI GGATG 2 cut(s) 84, 147
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 4 cut(s) 135, 218, 280, 287
CviKI_1 RGCY 4 cut(s) 135, 218, 280, 287
CviQI GTAC 1 cut(s) 91
DinI GGCGCC 1 cut(s) 127
DpnI GATC 2 cut(s) 107, 200
DpnII GATC 2 cut(s) 105, 198
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 151
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 2 cut(s) 71, 134
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 361
GlaI GCGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 135
HapII CCGG 2 cut(s) 88, 231
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 41, 331
HpaII CCGG 2 cut(s) 88, 231
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 25, 304
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 58, 205, 225
Hpy8I GTNNAC 2 cut(s) 25, 304
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 8, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 105, 198
LpnPI CCDG 7 cut(s) 55, 101, 173, 200, 238, 244, 278
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 354
MalI GATC 2 cut(s) 107, 200
MboI GATC 2 cut(s) 105, 198
MboII GAAGA 2 cut(s) 271, 359
MhlI GDGCHC 1 cut(s) 282
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 5 cut(s) 66, 122, 146, 246, 321
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 1 cut(s) 309
MspI CCGG 2 cut(s) 88, 231
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 132
NarI GGCGCC 1 cut(s) 126
NdeII GATC 2 cut(s) 105, 198
NlaIV GGNNCC 3 cut(s) 77, 127, 157
NmuCI GTSAC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 49
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 77, 127, 157
PspPI GGNCC 1 cut(s) 233
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 2 cut(s) 105, 198
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 282
SetI ASST 3 cut(s) 238, 282, 303
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SsiI CCGC 2 cut(s) 211, 335
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 1 cut(s) 361
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 204, 270
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 2 cut(s) 73, 360
TspGWI ACGGA 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.