Rroxscaffold_4G00293510

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014263
Physical Location & Seq
Forward (+)
13743930 .. 13745599
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293510.1

Sequence Viewer

Length: 366 bp
ATGAGTGCAGCGATGACAAGCGTGGACAGAGCAAAAGTAGAGTCGGCGAATAAATCGTTCAAGAGATGGGGCAGGAGGCACCCGTTCATCCGGTACGGACTTCCGATGATCTCCCTCACCGTGTTCGGCGCCGTCGGCCTCGCCCATCTCATCCAAGGCAGCAAAGACATCGCCAAGTTCAAAGACGACCAGGAATGGGAGATCATCGAGACCCGCAAAGCCCTTTCCAGAACCGGACCTCTAAACGCCTACAACCCCAAGAACATTTCACTCGACCAAGAGCTCAAGGCTTTGCAGGAGAAGTTGGACATTAACAACTACGATTACAAGAGGATTCCGCGACCAAATGAAGATAAGTCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

121

Amino Acids

13.89

Weight (kDa)

9.65

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX16 PF14138 30 - 117 5.5e-20 Cytochrome c oxidase assembly protein COX16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14145
fragaria_vesca FvH4_7g19210 FvH4_7g19210
malus_domestica MD01G1107500.v1.1
prunus_persica Prupe.2G212200_v2.0.a1
pyrus_communis pycom01g13440
rosa_chinensis RchiOBHm_Chr1g0363061
rosa_laevigata RLG00000027599
rosa_roxburghii Rroxscaffold_4G00293510
rosa_rugosa Rorug01G0304000 Rorug01G0304000 Rorug01G0304100
rosa_samantha Rh1AG313100 Rh1BG276300 Rh1CG293100 Rh1DG307000
rosa_wichuraiana Rw1G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 128
AccII CGCG 1 cut(s) 340
AciI CCGC 2 cut(s) 214, 338
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 61, 181
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 203
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 8, 159
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 236
BanI GGYRCC 2 cut(s) 78, 128
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 20, 171
BccI CCATC 2 cut(s) 60, 153
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 364
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 2 cut(s) 9, 160
BlsI GCNGC 2 cut(s) 10, 161
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 80, 130
BmrFI CCNGG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 154
BsaWI WCCGGW 2 cut(s) 90, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 2 cut(s) 87, 150
BseLI CCNNNNNNNGG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 20, 171
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 2 cut(s) 78, 128
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 91, 234
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 108, 201
BspACI CCGC 2 cut(s) 214, 338
BspANI GGCC 1 cut(s) 138
BspFNI CGCG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 80, 130
BspT107I GGYRCC 2 cut(s) 78, 128
BspTNI GGTCTC 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 2 cut(s) 108, 201
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 129
BstF5I GGATG 2 cut(s) 87, 150
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 2 cut(s) 111, 204
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 108, 201
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 20, 171
BsuRI GGCC 1 cut(s) 138
BtgZI GCGATG 2 cut(s) 26, 154
BtsCI GGATG 2 cut(s) 87, 150
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 4 cut(s) 138, 221, 283, 290
CviKI_1 RGCY 4 cut(s) 138, 221, 283, 290
CviQI GTAC 1 cut(s) 94
DinI GGCGCC 1 cut(s) 130
DpnI GATC 2 cut(s) 110, 203
DpnII GATC 2 cut(s) 108, 201
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 154
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 9, 160
FokI GGATG 2 cut(s) 74, 137
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 9, 160
FspBI CTAG 1 cut(s) 364
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 9, 160
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 138
HapII CCGG 2 cut(s) 91, 234
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 129
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 2 cut(s) 41, 334
HpaII CCGG 2 cut(s) 91, 234
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 3 cut(s) 61, 208, 228
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 8, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 129
HspAI GCGC 1 cut(s) 129
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 108, 201
LpnPI CCDG 7 cut(s) 58, 104, 176, 203, 241, 247, 281
Lsp1109I GCAGC 2 cut(s) 20, 171
MaeI CTAG 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 110, 203
MboI GATC 2 cut(s) 108, 201
MboII GAAGA 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 285
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 5 cut(s) 69, 125, 149, 249, 324
MseI TTAA 1 cut(s) 312
MspI CCGG 2 cut(s) 91, 234
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 135
NarI GGCGCC 1 cut(s) 129
NdeII GATC 2 cut(s) 108, 201
NlaIV GGNNCC 2 cut(s) 80, 130
NmuCI GTSAC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 2 cut(s) 10, 161
PleI GAGTC 1 cut(s) 49
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 80, 130
PspPI GGNCC 1 cut(s) 236
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 9, 160
Sau3AI GATC 2 cut(s) 108, 201
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 285
SetI ASST 2 cut(s) 241, 285
SfoI GGCGCC 1 cut(s) 130
SinI GGWCC 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SsiI CCGC 2 cut(s) 214, 338
SspDI GGCGCC 1 cut(s) 128
SspMI CTAG 1 cut(s) 364
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 207, 273
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 2 cut(s) 8, 159
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 2 cut(s) 76, 363
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 236
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.