AT4G14380

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015423
Physical Location & Seq
Forward (+)
8285578 .. 8286772
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14380.1

Sequence Viewer

Length: 603 bp
ATGGCTTCGTTGCGGCAAAAGAAGAAGCAAAATCCTGCGAAGAGGGCATGGAAAAACTTTACAAACATGGTCAAGTCGAAGTTCAGAGACATGGAGATCGCTTCATCGGTCAGAGAATCAACGGCTCGTGTCTTCCGGTTCATTTCTCGCCGTCTCATCGTTCCTTTTAGAACAAGGTACCTTCAAAACAATAGCTACACGGACAAATACTACTATAGCCGGAACCAAAGTTCTCGACAGTTTCTCAACTTCATTTCTCGATCTCTCACCAAACCAAAGCGTCGTCAGTATGGATACGATGATGAATACTCTCAAATCTATCAATACCAAAGCCAATCACGCGGTGAGGGGACAAGTGGGAGCAAAGAGAATGTTGTGAGACGAATAGAAGAGCAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGATGCCGGAGATTGCTGATTCGATGGAAGATGCTTGGAGGAGAGTGGTGGCTGCATCGCCTCATCTGCAGGTTAACGAGAGAGCCGACGAGTTCATCTACAAGTTTAGAGAAAGTATGAAGATGGAGAAAGAGAGGTCGTTTCTTGAATTCCAAGAAAGGCTAAAACGAAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

200

Amino Acids

24.19

Weight (kDa)

9.69

Isoelectric Point (pI)

83.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 165 - 198 3.6e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
Acc65I GGTACC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 177
AccII CGCG 1 cut(s) 342
AciI CCGC 2 cut(s) 13, 342
AcsI RAATTY 1 cut(s) 572
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 1 cut(s) 179
AgsI TTSAA 2 cut(s) 185, 572
AloI GAACNNNNNNTCC 2 cut(s) 214, 246
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Alw26I GTCTC 3 cut(s) 81, 158, 373
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 259, 356
BanI GGYRCC 1 cut(s) 177
BauI CACGAG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 442, 541
BceAI ACGGC 2 cut(s) 135, 138
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 3 cut(s) 81, 158, 373
BfmI CTRYAG 2 cut(s) 214, 491
BfuAI ACCTGC 1 cut(s) 484
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 2 cut(s) 14, 477
BlsI GCNGC 2 cut(s) 15, 478
BmiI GGNNCC 2 cut(s) 179, 224
BmsI GCATC 3 cut(s) 417, 445, 488
BpiI GAAGAC 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 135
BseGI GGATG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 177
BsiSI CCGG 3 cut(s) 136, 220, 431
BslFI GGGAC 1 cut(s) 364
BsmAI GTCTC 3 cut(s) 81, 158, 373
BsmBI CGTCTC 2 cut(s) 158, 373
BsmFI GGGAC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 96, 260
BspACI CCGC 2 cut(s) 13, 342
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 179, 224
BspMAI CTGCAG 1 cut(s) 495
BspMI ACCTGC 1 cut(s) 484
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 177
BssMI GATC 2 cut(s) 96, 260
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 35, 384
BstF5I GGATG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 2 cut(s) 99, 263
BstMAI GTCTC 3 cut(s) 81, 158, 373
BstMBI GATC 2 cut(s) 96, 260
BstMWI GCNNNNNNNGC 3 cut(s) 44, 339, 490
BstSFI CTRYAG 2 cut(s) 214, 491
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 1 cut(s) 124
BsuI GTATCC 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 432
BveI ACCTGC 1 cut(s) 484
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 178
CviAII CATG 3 cut(s) 48, 67, 91
CviJI RGCY 8 cut(s) 5, 125, 195, 219, 333, 476, 509, 586
CviKI_1 RGCY 8 cut(s) 5, 125, 195, 219, 333, 476, 509, 586
CviQI GTAC 1 cut(s) 178
DpnI GATC 2 cut(s) 98, 262
DpnII GATC 2 cut(s) 96, 260
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 2 cut(s) 35, 384
EarI CTCTTC 2 cut(s) 35, 384
EcoRI GAATTC 1 cut(s) 572
Esp3I CGTCTC 2 cut(s) 158, 373
FaeI CATG 3 cut(s) 51, 70, 94
FaiI YATR 6 cut(s) 49, 68, 92, 216, 291, 542
FaqI GGGAC 1 cut(s) 364
FatI CATG 3 cut(s) 47, 66, 90
Fnu4HI GCNGC 2 cut(s) 14, 477
FokI GGATG 1 cut(s) 439
Fsp4HI GCNGC 2 cut(s) 14, 477
GluI GCNGC 2 cut(s) 14, 477
HapII CCGG 3 cut(s) 136, 220, 431
HgaI GACGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 51, 70, 94
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 2 cut(s) 116, 443
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 3 cut(s) 136, 220, 431
HphI GGTGA 2 cut(s) 259, 356
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 2 cut(s) 86, 113
Hpy188III TCNNGA 3 cut(s) 234, 258, 569
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 2 cut(s) 285, 515
HpyAV CCTTC 2 cut(s) 191, 416
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 479, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 339, 490
Hsp92II CATG 3 cut(s) 51, 70, 94
KpnI GGTACC 1 cut(s) 181
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 2 cut(s) 96, 260
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 5 cut(s) 48, 149, 233, 444, 479
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 3 cut(s) 417, 445, 488
MalI GATC 2 cut(s) 98, 262
MboI GATC 2 cut(s) 96, 260
MluCI AATT 1 cut(s) 572
MnlI CCTC 5 cut(s) 36, 340, 456, 495, 552
MseI TTAA 1 cut(s) 498
MspI CCGG 3 cut(s) 136, 220, 431
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 44, 339, 490
NdeII GATC 2 cut(s) 96, 260
NlaIII CATG 3 cut(s) 51, 70, 94
NlaIV GGNNCC 2 cut(s) 179, 224
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 2 cut(s) 116, 443
PkrI GCNGC 2 cut(s) 15, 478
PspN4I GGNNCC 2 cut(s) 179, 224
PstI CTGCAG 1 cut(s) 495
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 2 cut(s) 14, 477
Sau3AI GATC 2 cut(s) 96, 260
SetI ASST 5 cut(s) 179, 183, 197, 498, 563
SfaNI GCATC 3 cut(s) 417, 445, 488
SfcI CTRYAG 2 cut(s) 214, 491
Sse9I AATT 1 cut(s) 572
SsiI CCGC 2 cut(s) 13, 342
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 77, 235, 259, 446
TaqII GACCGA 1 cut(s) 97
TasI AATT 1 cut(s) 572
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 2 cut(s) 116, 443
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 6 cut(s) 93, 130, 241, 318, 508, 557
TspGWI ACGGA 1 cut(s) 215
XapI RAATTY 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.