Rh4DG043200

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015423
Physical Location & Seq
Reverse (-)
7020626 .. 7023261
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG043200.1

Sequence Viewer

Length: 606 bp
ATGATTTCGTCACGACCAAATGCTTCGATGCCACGCTGGATGCTGGCAAAGAAGCTCGGCCGTGCTAGAAAGGCATGGAAGAGCTTCACTGGGAAAATACAGTCGAGACTCCACGAGCTCAACATCCCCAAAACCATCAAAACCACCACTAAACGTCTCCTCGACTTGCGCTGTTTGCGATTCTTTGTCCCTTCCAAACTACGCGCTCTCACTAAAACTTCCTCTACATTTTCTCGAAACCGATATTACAACCACCACTACCAACACCACAACAAGTTTCTCCATAAGAATGCTGCGACCATACACATAGACGAGCTCTTTGCACAGTCTGCCGACTCTGCGCACACCAAGAACCGACATTTAGATGCGCAAGCTGAAACAAGTAAAGGCAAAGAAGGGCTCGATGAAGGAAATATTCCAACGAGAAACAGCAAGAGTGTTTATAGCGTTGAAGATGCATGGCAGGCAGTGGTTGCTAGGTCACCACAGCTGCGGGTAGTGGACGAAAGGGCGGAGGAGTTTATTTACAAGTTTAGGCAAGACATGAAGCTTCAGAAGGAGAGGTCCATCCTTGAATTCCAGGAGATGTTGGCTCGAAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

201

Amino Acids

23.44

Weight (kDa)

10.28

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 167 - 199 5.4e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 342, 369
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 493, 512
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 536
AgsI TTSAA 2 cut(s) 452, 575
AjnI CCWGG 1 cut(s) 579
AluBI AGCT 7 cut(s) 55, 84, 118, 316, 374, 490, 550
AluI AGCT 7 cut(s) 55, 84, 118, 316, 374, 490, 550
Alw21I GWGCWC 2 cut(s) 120, 318
Alw26I GTCTC 2 cut(s) 100, 161
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 293, 490
ApoI RAATTY 1 cut(s) 575
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 4 cut(s) 171, 206, 343, 370
AspS9I GGNCC 1 cut(s) 564
AsuHPI GGTGA 1 cut(s) 474
AvaII GGWCC 1 cut(s) 564
BanII GRGCYC 3 cut(s) 120, 318, 402
BauI CACGAG 1 cut(s) 113
Bbv12I GWGCWC 2 cut(s) 120, 318
BbvI GCAGC 2 cut(s) 280, 477
BccI CCATC 2 cut(s) 143, 575
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 1 cut(s) 581
BcoDI GTCTC 2 cut(s) 100, 161
BfaI CTAG 3 cut(s) 66, 477, 604
BisI GCNGC 2 cut(s) 294, 491
BlsI GCNGC 2 cut(s) 295, 492
Bme1390I CCNGG 1 cut(s) 581
Bme18I GGWCC 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 564
BmrFI CCNGG 1 cut(s) 581
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 4 cut(s) 18, 30, 355, 445
BmuI ACTGGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 581
BseGI GGATG 3 cut(s) 45, 123, 567
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 2 cut(s) 149, 530
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 280, 477
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 120, 318
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 100, 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 3 cut(s) 120, 318, 402
BspACI CCGC 2 cut(s) 493, 512
BspANI GGCC 1 cut(s) 60
BspFNI CGCG 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 94
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 2 cut(s) 102, 327
Bst6I CTCTTC 1 cut(s) 74
BstAPI GCANNNNNTGC 2 cut(s) 329, 473
BstC8I GCNNGC 3 cut(s) 45, 372, 465
BstEII GGTNACC 1 cut(s) 480
BstF5I GGATG 3 cut(s) 45, 123, 567
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 4 cut(s) 171, 206, 343, 370
BstMAI GTCTC 2 cut(s) 100, 161
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 7 cut(s) 71, 175, 329, 338, 464, 473, 599
BstNI CCWGG 1 cut(s) 581
BstPI GGTNACC 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 579
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 280, 477
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 3 cut(s) 45, 123, 567
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 87, 474
Cac8I GCNNGC 3 cut(s) 45, 372, 465
CfoI GCGC 4 cut(s) 171, 206, 343, 370
Cfr13I GGNCC 1 cut(s) 564
CviAII CATG 3 cut(s) 75, 459, 544
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 527
Ecl136II GAGCTC 2 cut(s) 118, 316
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 3 cut(s) 120, 318, 402
Eco47I GGWCC 1 cut(s) 564
Eco52I CGGCCG 1 cut(s) 58
Eco53kI GAGCTC 2 cut(s) 118, 316
Eco57I CTGAAG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 480
EcoICRI GAGCTC 2 cut(s) 118, 316
EcoO65I GGTNACC 1 cut(s) 480
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 579
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 3 cut(s) 120, 318, 402
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 3 cut(s) 78, 462, 547
FaiI YATR 7 cut(s) 76, 285, 302, 308, 444, 460, 545
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 74, 458, 543
FauI CCCGC 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 294, 491
FokI GGATG 3 cut(s) 52, 110, 554
FriOI GRGCYC 3 cut(s) 120, 318, 402
Fsp4HI GCNGC 2 cut(s) 294, 491
FspBI CTAG 3 cut(s) 66, 477, 604
FspI TGCGCA 2 cut(s) 342, 369
GlaI GCGC 4 cut(s) 170, 205, 342, 369
GluI GCNGC 2 cut(s) 294, 491
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 4 cut(s) 171, 206, 343, 370
Hin1II CATG 3 cut(s) 78, 462, 547
Hin6I GCGC 4 cut(s) 169, 204, 341, 368
HinP1I GCGC 4 cut(s) 169, 204, 341, 368
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 3 cut(s) 108, 180, 335
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 1 cut(s) 555
Hpy188III TCNNGA 3 cut(s) 12, 105, 234
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 4 cut(s) 201, 389, 401, 550
HpyCH4III ACNGT 2 cut(s) 102, 327
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 323, 458
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 175, 329, 338, 464, 473, 599
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 78, 462, 547
HspAI GCGC 4 cut(s) 169, 204, 341, 368
LguI GCTCTTC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 22, 29, 75, 449, 566, 593
Lsp1109I GCAGC 2 cut(s) 280, 477
LweI GCATC 4 cut(s) 18, 30, 355, 445
MaeI CTAG 3 cut(s) 66, 477, 604
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 9, 480
MboII GAAGA 2 cut(s) 91, 464
MhlI GDGCHC 3 cut(s) 120, 318, 402
MluCI AATT 1 cut(s) 575
MlyI GAGTC 2 cut(s) 102, 329
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 4 cut(s) 170, 232, 508, 555
Mph1103I ATGCAT 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 83
MslI CAYNNNNRTG 2 cut(s) 288, 363
MspA1I CMGCKG 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 7 cut(s) 71, 175, 329, 338, 464, 473, 599
NlaIII CATG 3 cut(s) 78, 462, 547
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 9, 480
NsbI TGCGCA 2 cut(s) 342, 369
NsiI ATGCAT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 74
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 579
PkrI GCNGC 2 cut(s) 295, 492
PleI GAGTC 2 cut(s) 102, 329
PpsI GAGTC 2 cut(s) 102, 329
Psp124BI GAGCTC 2 cut(s) 120, 318
Psp6I CCWGG 1 cut(s) 579
PspEI GGTNACC 1 cut(s) 480
PspGI CCWGG 1 cut(s) 579
PspPI GGNCC 1 cut(s) 564
PvuII CAGCTG 1 cut(s) 490
RseI CAYNNNNRTG 2 cut(s) 288, 363
SacI GAGCTC 2 cut(s) 120, 318
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 2 cut(s) 294, 491
Sau96I GGNCC 1 cut(s) 564
SchI GAGTC 2 cut(s) 102, 329
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 3 cut(s) 120, 318, 402
SfaNI GCATC 4 cut(s) 18, 30, 355, 445
SinI GGWCC 1 cut(s) 564
SmiMI CAYNNNNRTG 2 cut(s) 288, 363
Sse9I AATT 1 cut(s) 575
SsiI CCGC 2 cut(s) 493, 512
SspI AATATT 1 cut(s) 415
SspMI CTAG 3 cut(s) 66, 477, 604
SstI GAGCTC 2 cut(s) 120, 318
StyD4I CCNGG 1 cut(s) 579
TaaI ACNGT 2 cut(s) 102, 327
TaiI ACGT 1 cut(s) 157
TaqI TCGA 6 cut(s) 26, 104, 162, 235, 402, 595
TasI AATT 1 cut(s) 575
TfiI GAWTC 1 cut(s) 180
TscAI CASTG 2 cut(s) 94, 474
TseFI GTSAC 2 cut(s) 9, 480
TseI GCWGC 2 cut(s) 293, 490
Tsp45I GTSAC 2 cut(s) 9, 480
TspDTI ATGAA 2 cut(s) 420, 560
TspRI CASTG 2 cut(s) 94, 474
VpaK11BI GGWCC 1 cut(s) 564
XapI RAATTY 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 3 cut(s) 66, 477, 604
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.