Rmu_sc0017178.1_g000001

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017178.1
OG0015423
Physical Location & Seq
Forward (+)
2546 .. 3111
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017178.1_g000001.1.cds

Sequence Viewer

Length: 447 bp
atgcttcgaggccacgctggattgctggcaaagaagctcggccgtgctaaaaaggcatggaagagcttcactggaaaaatacagtcgaaactccacgagctcaacatccccaaaaccatcaaaaccaccactaaacgtcttctcgacttgggctgtctgcgattcttttctgccgactctgcgtacaccaagaaccaacatttagatgcgcaagctgacacaagtagaggcaaagaagggctcgatgaaggaaatattccaacaagaaacagcaagagtgtttattgcgttgaagatgcatggcaggcagtggttgctaggtcaccacagctgcgggtagtggatgaaagggcggaggagtttatttacaaatttaggcaagacatgaagcttcagaaggagaggtccatccatgaattccatgagatgttggctcgaagtgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

148

Amino Acids

16.93

Weight (kDa)

9.79

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 210
AciI CCGC 2 cut(s) 334, 353
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 371, 416
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 6 cut(s) 37, 66, 100, 215, 331, 391
AluI AGCT 6 cut(s) 37, 66, 100, 215, 331, 391
Alw21I GWGCWC 1 cut(s) 102
AoxI GGCC 2 cut(s) 10, 40
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 2 cut(s) 371, 416
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 315
AvaII GGWCC 1 cut(s) 405
BanII GRGCYC 2 cut(s) 102, 243
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 125, 416
BceAI ACGGC 1 cut(s) 27
BfaI CTAG 2 cut(s) 318, 445
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 405
BmsI GCATC 2 cut(s) 196, 286
BpiI GAAGAC 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 76
BseGI GGATG 3 cut(s) 105, 349, 408
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 12, 42
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 102
BsnI GGCC 2 cut(s) 12, 42
Bsp1286I GDGCHC 2 cut(s) 102, 243
BspACI CCGC 2 cut(s) 334, 353
BspANI GGCC 2 cut(s) 12, 42
BspQI GCTCTTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 76
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 3 cut(s) 27, 213, 306
BstEII GGTNACC 1 cut(s) 321
BstF5I GGATG 3 cut(s) 105, 349, 408
BstHHI GCGC 1 cut(s) 211
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 5 cut(s) 53, 179, 305, 314, 440
BstPI GGTNACC 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 131
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 12, 42
BtsCI GGATG 3 cut(s) 105, 349, 408
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 69, 315
Cac8I GCNNGC 3 cut(s) 27, 213, 306
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 184
CviAII CATG 5 cut(s) 57, 300, 385, 413, 422
CviQI GTAC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 40
Eco24I GRGCYC 2 cut(s) 102, 243
Eco47I GGWCC 1 cut(s) 405
Eco52I CGGCCG 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 377
Eco91I GGTNACC 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 2 cut(s) 102, 243
FaeI CATG 5 cut(s) 60, 303, 388, 416, 425
FaiI YATR 5 cut(s) 58, 301, 386, 414, 423
FatI CATG 5 cut(s) 56, 299, 384, 412, 421
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 3 cut(s) 92, 356, 395
FriOI GRGCYC 2 cut(s) 102, 243
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 318, 445
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 332
HaeIII GGCC 2 cut(s) 12, 42
HhaI GCGC 1 cut(s) 211
Hin1II CATG 5 cut(s) 60, 303, 388, 416, 425
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 162, 176
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 3 cut(s) 230, 242, 391
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 179, 305, 314, 440
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 5 cut(s) 60, 303, 388, 416, 425
HspAI GCGC 1 cut(s) 209
LguI GCTCTTC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 3, 11, 57, 290
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 2 cut(s) 196, 286
MaeI CTAG 2 cut(s) 318, 445
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 321
MboII GAAGA 3 cut(s) 73, 131, 305
MhlI GDGCHC 2 cut(s) 102, 243
MluCI AATT 2 cut(s) 371, 416
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 3 cut(s) 221, 349, 396
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 331
MwoI GCNNNNNNNGC 5 cut(s) 53, 179, 305, 314, 440
NlaIII CATG 5 cut(s) 60, 303, 388, 416, 425
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 321
NsbI TGCGCA 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 333
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 102
PspEI GGTNACC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 405
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 56
SatI GCNGC 1 cut(s) 332
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 2 cut(s) 102, 243
SetI ASST 9 cut(s) 39, 68, 102, 139, 217, 323, 333, 393, 407
SfaNI GCATC 2 cut(s) 196, 286
SinI GGWCC 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 2 cut(s) 371, 416
SsiI CCGC 2 cut(s) 334, 353
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 318, 445
SstI GAGCTC 1 cut(s) 102
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 139
TaqI TCGA 5 cut(s) 7, 86, 144, 243, 436
TasI AATT 2 cut(s) 371, 416
TfiI GAWTC 1 cut(s) 162
TscAI CASTG 2 cut(s) 76, 315
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 4 cut(s) 261, 360, 401, 429
TspRI CASTG 2 cut(s) 76, 315
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 2 cut(s) 371, 416
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 2 cut(s) 318, 445
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.