Rroxscaffold_5G00338220

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015423
Physical Location & Seq
Reverse (-)
6420325 .. 6421055
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338220.1

Sequence Viewer

Length: 432 bp
ATGCTTCGAGGCCACGCTGGATTGCTGGCAAAGAAGCTCGGCCGTGCTAAAAAGGCATGGAAGAGCTTCACTGGAAAAATACAGTCGAAACTCCACGAGCTCAACATCCCCAAAACCATCAAAACCACCACTAAACACGAGCTCTTTGCACTGTCTGCCGACTCTGCGCACACCAAGAACCAACATTTAGATGCGCAAGCTGACACAAGTAGAGGCAAAGAAGGGCTCGATGAAGAAAATATTCCAACAAGAAACAGCAAGATTGTTTATTGCGTTGAAGATGCATGGCAGGCAGTGTTTGCTAGGTCACCACAGCTGCGGGTAGTGGATGAAAGGGCGGAGGAGTTTATTTACAAATTTAGGCAAGACATGAAGCTTCAGAAGGAGAGGTCCATCCTTGAATTCCAGGAGATGTTGGCTCGAAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

143

Amino Acids

16.4

Weight (kDa)

9.6

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 109 - 141 3.1e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 168, 195
AciI CCGC 2 cut(s) 319, 338
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 356, 401
AcuI CTGAAG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 278, 401
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 7 cut(s) 37, 66, 100, 142, 200, 316, 376
AluI AGCT 7 cut(s) 37, 66, 100, 142, 200, 316, 376
Alw21I GWGCWC 2 cut(s) 102, 144
AoxI GGCC 2 cut(s) 10, 40
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 2 cut(s) 356, 401
Asp700I GAANNNNTTC 2 cut(s) 65, 240
AspLEI GCGC 2 cut(s) 169, 196
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 300
AvaII GGWCC 1 cut(s) 390
BanII GRGCYC 3 cut(s) 102, 144, 228
BauI CACGAG 2 cut(s) 95, 137
Bbv12I GWGCWC 2 cut(s) 102, 144
BbvI GCAGC 1 cut(s) 303
BccI CCATC 2 cut(s) 125, 401
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 1 cut(s) 407
BfaI CTAG 2 cut(s) 303, 430
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 181, 271
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 407
BseGI GGATG 3 cut(s) 105, 334, 393
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 356
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 12, 42
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 102, 144
BsnI GGCC 2 cut(s) 12, 42
Bsp1286I GDGCHC 3 cut(s) 102, 144, 228
BspACI CCGC 2 cut(s) 319, 338
BspANI GGCC 2 cut(s) 12, 42
BspQI GCTCTTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 76
BssSI CACGAG 2 cut(s) 95, 137
Bst2BI CACGAG 2 cut(s) 95, 137
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 84, 153
Bst6I CTCTTC 1 cut(s) 56
BstAPI GCANNNNNTGC 2 cut(s) 155, 299
BstC8I GCNNGC 3 cut(s) 27, 198, 291
BstEII GGTNACC 1 cut(s) 306
BstF5I GGATG 3 cut(s) 105, 334, 393
BstHHI GCGC 2 cut(s) 169, 196
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 6 cut(s) 53, 155, 164, 290, 299, 425
BstNI CCWGG 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 303
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 12, 42
BtsCI GGATG 3 cut(s) 105, 334, 393
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 3 cut(s) 69, 149, 300
Cac8I GCNNGC 3 cut(s) 27, 198, 291
CfoI GCGC 2 cut(s) 169, 196
Cfr13I GGNCC 1 cut(s) 390
CviAII CATG 3 cut(s) 57, 285, 370
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 353
Ecl136II GAGCTC 2 cut(s) 100, 142
EclXI CGGCCG 1 cut(s) 40
Eco24I GRGCYC 3 cut(s) 102, 144, 228
Eco47I GGWCC 1 cut(s) 390
Eco52I CGGCCG 1 cut(s) 40
Eco53kI GAGCTC 2 cut(s) 100, 142
Eco57I CTGAAG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 306
EcoICRI GAGCTC 2 cut(s) 100, 142
EcoO65I GGTNACC 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 3 cut(s) 102, 144, 228
FaeI CATG 3 cut(s) 60, 288, 373
FaiI YATR 3 cut(s) 58, 286, 371
FatI CATG 3 cut(s) 56, 284, 369
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 3 cut(s) 92, 341, 380
FriOI GRGCYC 3 cut(s) 102, 144, 228
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 2 cut(s) 303, 430
FspI TGCGCA 2 cut(s) 168, 195
GlaI GCGC 2 cut(s) 168, 195
GluI GCNGC 1 cut(s) 317
HaeIII GGCC 2 cut(s) 12, 42
HhaI GCGC 2 cut(s) 169, 196
Hin1II CATG 3 cut(s) 60, 288, 373
Hin6I GCGC 2 cut(s) 167, 194
HinP1I GCGC 2 cut(s) 167, 194
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 215, 376
HpyCH4III ACNGT 2 cut(s) 84, 153
HpyCH4V TGCA 2 cut(s) 149, 284
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 155, 164, 290, 299, 425
Hsp92II CATG 3 cut(s) 60, 288, 373
HspAI GCGC 2 cut(s) 167, 194
LguI GCTCTTC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 3, 11, 57, 275, 392, 419
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 2 cut(s) 181, 271
MaeI CTAG 2 cut(s) 303, 430
MaeIII GTNAC 1 cut(s) 306
MboII GAAGA 3 cut(s) 73, 245, 290
MhlI GDGCHC 3 cut(s) 102, 144, 228
MluCI AATT 2 cut(s) 356, 401
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 3 cut(s) 206, 334, 381
Mph1103I ATGCAT 1 cut(s) 286
MroXI GAANNNNTTC 2 cut(s) 65, 240
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 6 cut(s) 53, 155, 164, 290, 299, 425
NlaIII CATG 3 cut(s) 60, 288, 373
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 306
NsbI TGCGCA 2 cut(s) 168, 195
NsiI ATGCAT 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 65, 240
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp124BI GAGCTC 2 cut(s) 102, 144
Psp6I CCWGG 1 cut(s) 405
PspEI GGTNACC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 405
PspPI GGNCC 1 cut(s) 390
PvuII CAGCTG 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 102, 144
SapI GCTCTTC 1 cut(s) 56
SatI GCNGC 1 cut(s) 317
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 3 cut(s) 102, 144, 228
SetI ASST 9 cut(s) 39, 68, 102, 144, 202, 308, 318, 378, 392
SfaNI GCATC 2 cut(s) 181, 271
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 2 cut(s) 356, 401
SsiI CCGC 2 cut(s) 319, 338
SspI AATATT 1 cut(s) 241
SspMI CTAG 2 cut(s) 303, 430
SstI GAGCTC 2 cut(s) 102, 144
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 84, 153
TaqI TCGA 4 cut(s) 7, 86, 228, 421
TasI AATT 2 cut(s) 356, 401
TscAI CASTG 3 cut(s) 76, 156, 300
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 246, 345, 386
TspRI CASTG 3 cut(s) 76, 156, 300
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 2 cut(s) 356, 401
XmnI GAANNNNTTC 2 cut(s) 65, 240
XspI CTAG 2 cut(s) 303, 430
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.