FvH4_4g03670

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015423
Physical Location & Seq
Reverse (-)
3259282 .. 3260543
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03670.t1

Sequence Viewer

Length: 597 bp
ATGATTTGGAAAGCTTCGTTGCCACGCTGGATGCTGGCAAAGAAGCTCGGCCGTGCTAAAAGGGCATGGAAGAGCTTCACCGGGAAAGTAGAGTCGAAACTCCACGGTCTCAACATCCCCAAAACCATCAAAACCACCACGAAACGCCTCCTCGACTTGCGGTGTTTGCGATTCGTCGTCCCATCCAAACTACGCGCTCTCACCAAAGCTTCCTCTACCTTTTCTCGGAGCCAATATTACAACCACCACTACCAGCACCACAGCAAGTTTCTCCATAAGAATGCTGCAACTATACGCATAGACGAGCTCTTTGCACAGTCTGCAGGCAATGCGCACACCAAGAACAAACATTTAGATGCGCAGGCCGAAACAAGCAGAGGCAAAGAAGGGCTCGACGAAGGAAATGTTGCGACGAGAAACAGCAAGAGTGTTTATAGCGTTGAAGATGCATGGCAGGCGGTGGTTGCTAGGTCGCCACAGTTGCGGGTTGTGGACGAAAGGGCGGAGGAGTTTATTTACAAGTTTAGGCAAGACATGAAGCTTCAGAAGGAGAGATCTATCCTTGAATTCCAGGAGATGTTGGCTCGAAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

199

Amino Acids

22.87

Weight (kDa)

10.26

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 164 - 196 5.3e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 333, 360
AccII CGCG 1 cut(s) 195
AciI CCGC 4 cut(s) 160, 458, 484, 503
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 443, 566
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 6 cut(s) 14, 46, 75, 209, 307, 541
AluI AGCT 6 cut(s) 14, 46, 75, 209, 307, 541
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 2 cut(s) 49, 363
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 566
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 3 cut(s) 197, 334, 361
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 70, 193
BanII GRGCYC 2 cut(s) 309, 393
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 134, 190
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 468, 595
BfmI CTRYAG 1 cut(s) 321
BglII AGATCT 1 cut(s) 554
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 82, 572
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 82, 572
BmsI GCATC 3 cut(s) 21, 346, 436
BpuMI CCSGG 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 36, 114, 182
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 334
BseRI GAGGAG 2 cut(s) 140, 521
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 51, 365
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 2 cut(s) 51, 365
Bso31I GGTCTC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 309, 393
Bsp143I GATC 1 cut(s) 554
BspACI CCGC 4 cut(s) 160, 458, 484, 503
BspANI GGCC 2 cut(s) 51, 365
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 3 cut(s) 107, 318, 480
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 2 cut(s) 320, 329
BstC8I GCNNGC 4 cut(s) 36, 325, 363, 456
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 3 cut(s) 36, 114, 182
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 3 cut(s) 197, 334, 361
BstKTI GATC 1 cut(s) 557
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 554
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 8 cut(s) 62, 166, 320, 329, 455, 464, 481, 590
BstNI CCWGG 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 80, 570
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BstZI CGGCCG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 51, 365
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 3 cut(s) 36, 114, 182
Cac8I GCNNGC 4 cut(s) 36, 325, 363, 456
CfoI GCGC 3 cut(s) 197, 334, 361
CviAII CATG 3 cut(s) 66, 450, 535
DpnI GATC 1 cut(s) 556
DpnII GATC 1 cut(s) 554
EaeI YGGCCR 1 cut(s) 49
EagI CGGCCG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 518
Ecl136II GAGCTC 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 49
Eco24I GRGCYC 2 cut(s) 309, 393
Eco31I GGTCTC 1 cut(s) 113
Eco52I CGGCCG 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 2 cut(s) 309, 393
FaeI CATG 3 cut(s) 69, 453, 538
FaiI YATR 7 cut(s) 67, 276, 293, 299, 435, 451, 536
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 65, 449, 534
FauI CCCGC 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 3 cut(s) 43, 101, 169
FriOI GRGCYC 2 cut(s) 309, 393
Fsp4HI GCNGC 1 cut(s) 285
FspAI RTGCGCAY 1 cut(s) 333
FspBI CTAG 2 cut(s) 468, 595
FspI TGCGCA 2 cut(s) 333, 360
GlaI GCGC 3 cut(s) 196, 333, 360
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 51, 365
HapII CCGG 1 cut(s) 81
HhaI GCGC 3 cut(s) 197, 334, 361
Hin1II CATG 3 cut(s) 69, 453, 538
Hin6I GCGC 3 cut(s) 195, 332, 359
HinP1I GCGC 3 cut(s) 195, 332, 359
HindIII AAGCTT 3 cut(s) 12, 207, 539
HinfI GANTC 2 cut(s) 92, 171
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 70, 193
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 2 cut(s) 228, 546
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 3 cut(s) 179, 398, 415
HpyAV CCTTC 3 cut(s) 380, 392, 541
HpyCH4III ACNGT 3 cut(s) 107, 318, 480
HpyCH4V TGCA 4 cut(s) 287, 314, 323, 449
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 166, 320, 329, 455, 464, 481, 590
Hsp92II CATG 3 cut(s) 69, 453, 538
HspAI GCGC 3 cut(s) 195, 332, 359
Kzo9I GATC 1 cut(s) 554
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 9 cut(s) 13, 20, 94, 266, 309, 347, 440, 557, 584
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 3 cut(s) 21, 346, 436
MaeI CTAG 2 cut(s) 468, 595
MalI GATC 1 cut(s) 556
MboI GATC 1 cut(s) 554
MboII GAAGA 2 cut(s) 82, 455
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 2 cut(s) 309, 393
MluCI AATT 1 cut(s) 566
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 5 cut(s) 158, 161, 223, 371, 499
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 74
MslI CAYNNNNRTG 2 cut(s) 279, 354
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 82, 572
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 8 cut(s) 62, 166, 320, 329, 455, 464, 481, 590
NciI CCSGG 1 cut(s) 82
NdeII GATC 1 cut(s) 554
NlaIII CATG 3 cut(s) 69, 453, 538
NlaIV GGNNCC 1 cut(s) 230
NmeAIII GCCGAG 1 cut(s) 27
NsbI TGCGCA 2 cut(s) 333, 360
NsiI ATGCAT 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 65
PctI GAATGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 171
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 554
RseI CAYNNNNRTG 2 cut(s) 279, 354
SacI GAGCTC 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 65
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 554
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 82, 572
SduI GDGCHC 2 cut(s) 309, 393
SetI ASST 8 cut(s) 16, 48, 77, 211, 221, 309, 473, 543
SfaNI GCATC 3 cut(s) 21, 346, 436
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 2 cut(s) 279, 354
Sse9I AATT 1 cut(s) 566
SsiI CCGC 4 cut(s) 160, 458, 484, 503
SspI AATATT 1 cut(s) 236
SspMI CTAG 2 cut(s) 468, 595
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 80, 570
TaaI ACNGT 3 cut(s) 107, 318, 480
TaqI TCGA 4 cut(s) 95, 153, 393, 586
TasI AATT 1 cut(s) 566
TfiI GAWTC 1 cut(s) 171
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 551
XapI RAATTY 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 2 cut(s) 468, 595
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.