MD13G1214200.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015423
Physical Location & Seq
Reverse (-)
20249239 .. 20249880
642 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1214200.v1.1.491

Sequence Viewer

Length: 642 bp
ATGTCACGCCGGACGCTGGCAAAGAAGTTTGGCTGCGGGAAGAGGGCGTGGAGGAGCTTCACCGCTAAAGTACAATCGAAACTCCACAAGCTCACCATCCCCAAGGCAATCAAAACCACCGCCAGACGCCTCTGTGCCTTGCGGAGCAAGTTTCATTTTCTCATCCCATCCAAACTCTGCGCTCTCACCAGAAGTTCCTCTGGCTTCCCTAGTAACCGATACTATAACCATCACTATATCTTTGAATCCCGCATTGATTATGCACAGGGAAGATCTAGCTACCAGTACCACAACAAGCTTCATCATACTAAGAATACGGCAGCCATACACATAGACGAGCTCTTTGAAGAGCCTGCCGCCTGTGTGGACGCCAAGAAGGATCCACATTTTGGTGAGCAAGCAGAAACGAGCAAAGGAAAACAGGCAGTCGATGTGGACGATGACTTGAAGGTTGTGACAAGAGATAAGAAGAGTATGTATAGCGTTGAAGATGCGTGGCAGGCGGTGGTTGCTAAGTCGCCTCAGCTGCGGGTGGTGGATGAAAGAGCGGAGGAGTTCATTCACAAGTTTAGGCAAGACATGAAGCTTCAGAAGGAGAAATCCCTTCTTGAGTTCCAGGAGATGTTGGCTCGCAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

214

Amino Acids

24.65

Weight (kDa)

9.71

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 179 - 211 1.3e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 548
AciI CCGC 9 cut(s) 36, 63, 120, 142, 250, 357, 503, 529, 548
AclWI GGATC 2 cut(s) 374, 387
AcuI CTGAAG 1 cut(s) 572
AcyI GRCGYC 2 cut(s) 127, 369
AfaI GTAC 2 cut(s) 72, 287
AfiI CCNNNNNNNGG 2 cut(s) 16, 389
AgsI TTSAA 4 cut(s) 245, 347, 448, 488
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 7 cut(s) 57, 91, 279, 298, 340, 526, 586
AluI AGCT 7 cut(s) 57, 91, 279, 298, 340, 526, 586
Alw21I GWGCWC 1 cut(s) 342
AlwI GGATC 2 cut(s) 374, 387
ApeKI GCWGC 3 cut(s) 33, 320, 526
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 1 cut(s) 182
AsuHPI GGTGA 4 cut(s) 52, 85, 178, 404
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 3 cut(s) 20, 332, 513
BccI CCATC 3 cut(s) 104, 175, 237
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 617
BfaI CTAG 2 cut(s) 210, 276
BglII AGATCT 1 cut(s) 272
BisI GCNGC 4 cut(s) 34, 321, 357, 527
BlsI GCNGC 4 cut(s) 35, 322, 358, 528
Bme1390I CCNGG 1 cut(s) 617
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 617
BmsI GCATC 1 cut(s) 481
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 629
BsaHI GRCGYC 2 cut(s) 127, 369
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 389
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 4 cut(s) 96, 162, 167, 544
BseLI CCNNNNNNNGG 2 cut(s) 16, 389
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 2 cut(s) 67, 566
BseXI GCAGC 3 cut(s) 20, 332, 513
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 16, 389
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 272, 379
BspACI CCGC 9 cut(s) 36, 63, 120, 142, 250, 357, 503, 529, 548
BspCNI CTCAG 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 2 cut(s) 374, 387
BspQI GCTCTTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 548
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 2 cut(s) 272, 379
BssNI GRCGYC 2 cut(s) 127, 369
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 617
Bst6I CTCTTC 3 cut(s) 35, 342, 464
BstACI GRCGYC 2 cut(s) 127, 369
BstC8I GCNNGC 5 cut(s) 18, 354, 399, 501, 631
BstDEI CTNAG 3 cut(s) 309, 513, 522
BstF5I GGATG 4 cut(s) 96, 162, 167, 544
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 2 cut(s) 275, 382
BstMBI GATC 2 cut(s) 272, 379
BstMWI GCNNNNNNNGC 3 cut(s) 500, 509, 526
BstNI CCWGG 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 615
BstV1I GCAGC 3 cut(s) 20, 332, 513
BstX2I RGATCY 2 cut(s) 272, 379
BstYI RGATCY 2 cut(s) 272, 379
BtsCI GGATG 4 cut(s) 96, 162, 167, 544
Cac8I GCNNGC 5 cut(s) 18, 354, 399, 501, 631
CfoI GCGC 1 cut(s) 182
CseI GACGC 3 cut(s) 22, 135, 377
Csp6I GTAC 2 cut(s) 71, 286
CviAII CATG 1 cut(s) 580
CviQI GTAC 2 cut(s) 71, 286
DdeI CTNAG 3 cut(s) 309, 513, 522
DpnI GATC 2 cut(s) 274, 381
DpnII GATC 2 cut(s) 272, 379
Eam1104I CTCTTC 3 cut(s) 35, 342, 464
EarI CTCTTC 3 cut(s) 35, 342, 464
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 583
FaiI YATR 9 cut(s) 225, 237, 261, 306, 326, 332, 476, 480, 581
FatI CATG 1 cut(s) 579
FauI CCCGC 3 cut(s) 29, 257, 522
Fnu4HI GCNGC 4 cut(s) 34, 321, 357, 527
FokI GGATG 4 cut(s) 83, 149, 154, 551
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 4 cut(s) 34, 321, 357, 527
FspBI CTAG 2 cut(s) 210, 276
GlaI GCGC 1 cut(s) 181
GluI GCNGC 4 cut(s) 34, 321, 357, 527
HapII CCGG 1 cut(s) 10
HgaI GACGC 3 cut(s) 22, 135, 377
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 2 cut(s) 127, 369
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 2 cut(s) 296, 584
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 10
HphI GGTGA 4 cut(s) 52, 85, 178, 404
Hpy166II GTNNAC 2 cut(s) 367, 436
Hpy188I TCNGA 1 cut(s) 591
Hpy188III TCNNGA 1 cut(s) 608
Hpy8I GTNNAC 2 cut(s) 367, 436
HpyAV CCTTC 4 cut(s) 370, 442, 586, 614
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 509, 526
HpyF3I CTNAG 3 cut(s) 309, 513, 522
Hsp92I GRCGYC 2 cut(s) 127, 369
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 272, 379
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 54, 144
Lsp1109I GCAGC 3 cut(s) 20, 332, 513
LweI GCATC 1 cut(s) 481
MaeI CTAG 2 cut(s) 210, 276
MaeIII GTNAC 3 cut(s) 3, 212, 454
MalI GATC 2 cut(s) 274, 381
MbiI CCGCTC 1 cut(s) 548
MboI GATC 2 cut(s) 272, 379
MboII GAAGA 5 cut(s) 52, 282, 359, 481, 500
MflI RGATCY 2 cut(s) 272, 379
MhlI GDGCHC 1 cut(s) 342
MnlI CCTC 6 cut(s) 36, 45, 140, 208, 531, 544
MseI TTAA 1 cut(s) 640
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 3 cut(s) 500, 509, 526
NdeII GATC 2 cut(s) 272, 379
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 2 cut(s) 3, 454
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 4 cut(s) 35, 322, 358, 528
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 381
PsuI RGATCY 2 cut(s) 272, 379
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 2 cut(s) 72, 287
RsaNI GTAC 2 cut(s) 71, 286
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 640
SatI GCNGC 4 cut(s) 34, 321, 357, 527
Sau3AI GATC 2 cut(s) 272, 379
ScrFI CCNGG 1 cut(s) 617
SduI GDGCHC 1 cut(s) 342
SetI ASST 8 cut(s) 59, 93, 281, 300, 342, 453, 528, 588
SfaNI GCATC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SsiI CCGC 9 cut(s) 36, 63, 120, 142, 250, 357, 503, 529, 548
SspMI CTAG 2 cut(s) 210, 276
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 102
TaqI TCGA 2 cut(s) 77, 429
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 640
Tru9I TTAA 1 cut(s) 640
TseFI GTSAC 2 cut(s) 3, 454
TseI GCWGC 3 cut(s) 33, 320, 526
Tsp45I GTSAC 2 cut(s) 3, 454
TspDTI ATGAA 5 cut(s) 143, 290, 547, 555, 596
Van91I CCANNNNNTGG 1 cut(s) 389
XspI CTAG 2 cut(s) 210, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.