MD16G1219200.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015423
Physical Location & Seq
Reverse (-)
21776258 .. 21776932
675 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1219200.v1.1.491

Sequence Viewer

Length: 675 bp
ATGATTTCGTTACGATCCAATACTTTTAGGTCATGCTGGACGCTAGCAAAGAAGTTTGGCTGCGCGAAGAGGGCGTGGAGGAGCTTCACCGATAAAGTGCAATCAAAACTCCACAAACTCAACATCCCCAGAGCAATCAAAACCACTGCCAGACACCTCCGTGCCTTGCAGAGCAAGTTTCATTTTCTTATCCCATCCAAACTCCGCGCTCTCACCAAACCTTCCTCTACCTTCCCTAGGAACCGATACTATAACCATCACTACGACACCCTTGACTCCCATGTCGGTTATGCGCTGGGAAGATCTGGCTACCAGTACCACAACAAGCTCCATCATAATAAGAATACGGAAGCCATACACATAGACGAGCTCTTTGAAGAGCCTGCTGCCGTCTGTGTGGACGCCAAGAAGGATCGACATTTTGGTGAGCAAGCAGAAACAAGCAAAGGGAAACAAGCGGTTGACGAGGAGGATGATGGGAAGGTTGTGAAAAGAGATAAGAAGAGTTTGTACAGCGTTGAAGATGCGTGGCAAGCAGTGGTTGCAAAGTCGCCTCAGCTGCGGGTAGTGGATGAAAGAGCGGAGGAGTTCATTCACAAGTTTAGGCAAGACATGAAGCTTCAGAAGGAGAAATCCCTTCTTGAGTTCCAGGAGATGTTGGCTCGCAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

225

Amino Acids

26.1

Weight (kDa)

9.68

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 190 - 222 1.4e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 581
AccII CGCG 2 cut(s) 65, 207
AciI CCGC 4 cut(s) 205, 458, 562, 581
AclWI GGATC 2 cut(s) 9, 420
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 2 cut(s) 317, 512
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 2 cut(s) 377, 521
AjnI CCWGG 1 cut(s) 648
AleI CACNNNNGTG 1 cut(s) 159
AluBI AGCT 5 cut(s) 84, 328, 370, 559, 619
AluI AGCT 5 cut(s) 84, 328, 370, 559, 619
Alw21I GWGCWC 1 cut(s) 372
AlwI GGATC 2 cut(s) 9, 420
ApeKI GCWGC 3 cut(s) 60, 386, 559
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspA2I CCTAGG 1 cut(s) 236
AspLEI GCGC 3 cut(s) 65, 209, 295
AsuHPI GGTGA 3 cut(s) 79, 205, 437
AsuNHI GCTAGC 1 cut(s) 43
AvrII CCTAGG 1 cut(s) 236
BanII GRGCYC 1 cut(s) 372
BarI GAAGNNNNNNTAC 2 cut(s) 494, 526
Bbv12I GWGCWC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 555
BbvI GCAGC 3 cut(s) 47, 373, 546
BccI CCATC 4 cut(s) 202, 264, 339, 470
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 650
BfaI CTAG 2 cut(s) 44, 237
BglII AGATCT 1 cut(s) 302
BisI GCNGC 3 cut(s) 61, 387, 560
BlnI CCTAGG 1 cut(s) 236
BlsI GCNGC 3 cut(s) 62, 388, 561
Bme1390I CCNGG 1 cut(s) 650
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 650
BmsI GCATC 1 cut(s) 514
BmtI GCTAGC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 662
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 4 cut(s) 123, 194, 478, 577
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 569
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 3 cut(s) 94, 482, 599
BseXI GCAGC 3 cut(s) 47, 373, 546
BseYI CCCAGC 1 cut(s) 295
Bsh1236I CGCG 2 cut(s) 65, 207
BsiHKAI GWGCWC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 3 cut(s) 14, 302, 412
BspACI CCGC 4 cut(s) 205, 458, 562, 581
BspCNI CTCAG 1 cut(s) 568
BspFNI CGCG 2 cut(s) 65, 207
BspLI GGNNCC 1 cut(s) 242
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 2 cut(s) 9, 420
BspQI GCTCTTC 1 cut(s) 372
BsrBI CCGCTC 1 cut(s) 581
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 3 cut(s) 14, 302, 412
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 650
Bst6I CTCTTC 3 cut(s) 62, 372, 497
BstACI GRCGYC 1 cut(s) 402
BstAPI GCANNNNNTGC 1 cut(s) 542
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 5 cut(s) 45, 384, 432, 534, 664
BstDEI CTNAG 1 cut(s) 555
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 4 cut(s) 123, 194, 478, 577
BstFNI CGCG 2 cut(s) 65, 207
BstHHI GCGC 3 cut(s) 65, 209, 295
BstKTI GATC 3 cut(s) 17, 305, 415
BstMBI GATC 3 cut(s) 14, 302, 412
BstMWI GCNNNNNNNGC 4 cut(s) 71, 533, 542, 559
BstNI CCWGG 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 648
BstUI CGCG 2 cut(s) 65, 207
BstV1I GCAGC 3 cut(s) 47, 373, 546
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BtsCI GGATG 4 cut(s) 123, 194, 478, 577
BtsI GCAGTG 2 cut(s) 144, 543
BtsIMutI CAGTG 2 cut(s) 144, 543
Cac8I GCNNGC 5 cut(s) 45, 384, 432, 534, 664
CfoI GCGC 3 cut(s) 65, 209, 295
CseI GACGC 2 cut(s) 49, 410
Csp6I GTAC 2 cut(s) 316, 511
CviAII CATG 3 cut(s) 33, 281, 613
CviQI GTAC 2 cut(s) 316, 511
DdeI CTNAG 1 cut(s) 555
DpnI GATC 3 cut(s) 16, 304, 414
DpnII GATC 3 cut(s) 14, 302, 412
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 3 cut(s) 62, 372, 497
EarI CTCTTC 3 cut(s) 62, 372, 497
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 605
EcoICRI GAGCTC 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 3 cut(s) 36, 284, 616
FaiI YATR 9 cut(s) 34, 252, 282, 291, 336, 356, 362, 614, 673
FatI CATG 3 cut(s) 32, 280, 612
FauI CCCGC 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 61, 387, 560
FokI GGATG 4 cut(s) 110, 181, 485, 584
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 3 cut(s) 61, 387, 560
FspBI CTAG 2 cut(s) 44, 237
GlaI GCGC 3 cut(s) 64, 208, 294
GluI GCNGC 3 cut(s) 61, 387, 560
GsaI CCCAGC 1 cut(s) 299
HgaI GACGC 2 cut(s) 49, 410
HhaI GCGC 3 cut(s) 65, 209, 295
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 3 cut(s) 36, 284, 616
Hin6I GCGC 3 cut(s) 63, 207, 293
HinP1I GCGC 3 cut(s) 63, 207, 293
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 1 cut(s) 275
HphI GGTGA 3 cut(s) 79, 205, 437
Hpy166II GTNNAC 2 cut(s) 400, 463
Hpy188I TCNGA 1 cut(s) 624
Hpy188III TCNNGA 1 cut(s) 641
Hpy8I GTNNAC 2 cut(s) 400, 463
HpyAV CCTTC 6 cut(s) 231, 241, 403, 475, 619, 647
HpyCH4V TGCA 3 cut(s) 100, 169, 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 533, 542, 559
HpyF3I CTNAG 1 cut(s) 555
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 3 cut(s) 36, 284, 616
HspAI GCGC 3 cut(s) 63, 207, 293
Kzo9I GATC 3 cut(s) 14, 302, 412
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 2 cut(s) 81, 333
LpnPI CCDG 9 cut(s) 22, 142, 163, 281, 291, 326, 396, 635, 662
Lsp1109I GCAGC 3 cut(s) 47, 373, 546
LweI GCATC 1 cut(s) 514
MaeI CTAG 2 cut(s) 44, 237
MaeIII GTNAC 1 cut(s) 9
MalI GATC 3 cut(s) 16, 304, 414
MbiI CCGCTC 1 cut(s) 581
MboI GATC 3 cut(s) 14, 302, 412
MboII GAAGA 5 cut(s) 79, 312, 389, 514, 533
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 372
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 8 cut(s) 63, 72, 167, 235, 460, 463, 564, 577
MslI CAYNNNNRTG 2 cut(s) 159, 423
MspA1I CMGCKG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 650
MvaI CCWGG 1 cut(s) 650
MvnI CGCG 2 cut(s) 65, 207
MwoI GCNNNNNNNGC 4 cut(s) 71, 533, 542, 559
NdeII GATC 3 cut(s) 14, 302, 412
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 3 cut(s) 36, 284, 616
NlaIV GGNNCC 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 648
PkrI GCNGC 3 cut(s) 62, 388, 561
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 648
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 559
RsaI GTAC 2 cut(s) 317, 512
RsaNI GTAC 2 cut(s) 316, 511
RseI CAYNNNNRTG 2 cut(s) 159, 423
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 372
SatI GCNGC 3 cut(s) 61, 387, 560
Sau3AI GATC 3 cut(s) 14, 302, 412
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 650
SduI GDGCHC 1 cut(s) 372
SfaNI GCATC 1 cut(s) 514
SmiMI CAYNNNNRTG 2 cut(s) 159, 423
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SsiI CCGC 4 cut(s) 205, 458, 562, 581
SspMI CTAG 2 cut(s) 44, 237
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 648
StyI CCWWGG 1 cut(s) 236
TaqI TCGA 1 cut(s) 415
TatI WGTACW 1 cut(s) 510
TscAI CASTG 2 cut(s) 151, 543
TseI GCWGC 3 cut(s) 60, 386, 559
TspDTI ATGAA 5 cut(s) 170, 580, 588, 629, 660
TspGWI ACGGA 2 cut(s) 149, 362
TspRI CASTG 2 cut(s) 151, 543
XagI CCTNNNNNAGG 1 cut(s) 235
XmaJI CCTAGG 1 cut(s) 236
XspI CTAG 2 cut(s) 44, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.