Prupe.1G039600_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015423
Physical Location & Seq
Reverse (-)
2826042 .. 2826875
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G039600.1

Sequence Viewer

Length: 675 bp
ATGATCTCGTCACGACCTGATGCTTCTATGTCACGCCGGGTGCTGGCAAAGAAGCTTGGCTGCGCCAAGAAGTCCTGGAAGAGCTTCACCAACAAGCTAAAATCAAAACTCCACAAGCTCAACATCCCCAAAGCTGTCGAAACAACCACCAGACACCTCCGTGCCTTGCGAAGCAAGTTCCATTTCCTCATCCCATCCAAACTCCGAGCTCTCACCAAAGCTTCCTCTACCTTTCCTAGAGACCAGTTTTACAACCATCACTATGAGGCCTTTGAATCCCACATGGGCCATGCACTAGGTAGATCTAGCTACCAGTACCACAACAAGGTTGTTCATAATAAGAATTCTGCAGCCATACACATAGATGAGCTCTTTGCAGAGCCTGCCGCCGTCTATGAGGACACAAAGAAGAACCAGCATTCAGGTGAGCAGGCGGAAACAAGCAAAGGGAAACAAGTGGTCGAGGATAACGGTGATGGGAAGGCTGTAGCAAGAGATAAAAAGAGTTTGTATAGCGTTGAAGATGCATGGCAGGCAGTGGTTGCTAAGTCACCACAGCTGCGAGTGGTGGATGAGAGGGCAGAGGAGTTCATTACCAAGTTTAGGCAAGACATGAAACTTCAGAAGGAGAAGTCCCTTCTTGAGTTCCAAGAGATGTTGGCTCGGAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

225

Amino Acids

25.64

Weight (kDa)

9.82

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 387, 434
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 2 cut(s) 317, 670
AfiI CCNNNNNNNGG 3 cut(s) 43, 325, 603
AgsI TTSAA 2 cut(s) 275, 521
AjnI CCWGG 1 cut(s) 74
AleI CACNNNNGTG 1 cut(s) 159
Alw21I GWGCWC 2 cut(s) 211, 372
Alw26I GTCTC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 2 cut(s) 267, 286
ApeKI GCWGC 3 cut(s) 60, 350, 559
ApoI RAATTY 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 5 cut(s) 79, 205, 437, 485, 543
BanII GRGCYC 2 cut(s) 211, 372
Bbv12I GWGCWC 2 cut(s) 211, 372
BbvI GCAGC 3 cut(s) 47, 362, 546
BccI CCATC 3 cut(s) 202, 264, 470
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 76
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 3 cut(s) 237, 296, 306
BfmI CTRYAG 2 cut(s) 348, 486
BglII AGATCT 1 cut(s) 302
BisI GCNGC 4 cut(s) 61, 351, 387, 560
BlsI GCNGC 4 cut(s) 62, 352, 388, 561
Bme1390I CCNGG 2 cut(s) 38, 76
BmgT120I GGNCC 1 cut(s) 286
BmrFI CCNGG 2 cut(s) 38, 76
BmsI GCATC 2 cut(s) 10, 514
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 325, 603
Bse1I ACTGG 2 cut(s) 244, 313
BseBI CCWGG 1 cut(s) 76
BseGI GGATG 4 cut(s) 123, 189, 194, 577
BseLI CCNNNNNNNGG 3 cut(s) 43, 325, 603
BseNI ACTGG 2 cut(s) 244, 313
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 3 cut(s) 47, 362, 546
BshFI GGCC 2 cut(s) 269, 288
BsiHKAI GWGCWC 2 cut(s) 211, 372
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 3 cut(s) 43, 325, 603
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 2 cut(s) 269, 288
Bso31I GGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 211, 372
Bsp143I GATC 2 cut(s) 3, 302
BspACI CCGC 2 cut(s) 387, 434
BspANI GGCC 2 cut(s) 269, 288
BspMAI CTGCAG 1 cut(s) 352
BspQI GCTCTTC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 234
BsrI ACTGG 2 cut(s) 244, 313
BssMI GATC 2 cut(s) 3, 302
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 1 cut(s) 74
BstAPI GCANNNNNTGC 2 cut(s) 383, 542
BstC8I GCNNGC 4 cut(s) 45, 384, 432, 534
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 4 cut(s) 123, 189, 194, 577
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 6, 305
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 3, 302
BstMWI GCNNNNNNNGC 3 cut(s) 383, 533, 542
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 36, 74
BstSFI CTRYAG 2 cut(s) 348, 486
BstV1I GCAGC 3 cut(s) 47, 362, 546
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 2 cut(s) 269, 288
BtsCI GGATG 4 cut(s) 123, 189, 194, 577
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 4 cut(s) 45, 384, 432, 534
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 316, 669
CviAII CATG 4 cut(s) 283, 290, 528, 613
CviQI GTAC 2 cut(s) 316, 669
DdeI CTNAG 1 cut(s) 546
DpnI GATC 2 cut(s) 5, 304
DpnII GATC 2 cut(s) 3, 302
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 449
Ecl136II GAGCTC 2 cut(s) 209, 370
Eco147I AGGCCT 1 cut(s) 269
Eco24I GRGCYC 2 cut(s) 211, 372
Eco31I GGTCTC 1 cut(s) 234
Eco53kI GAGCTC 2 cut(s) 209, 370
Eco57I CTGAAG 1 cut(s) 605
EcoICRI GAGCTC 2 cut(s) 209, 370
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 2 cut(s) 211, 372
FaeI CATG 4 cut(s) 286, 293, 531, 616
FaqI GGGAC 1 cut(s) 619
FatI CATG 4 cut(s) 282, 289, 527, 612
Fnu4HI GCNGC 4 cut(s) 61, 351, 387, 560
FokI GGATG 4 cut(s) 110, 176, 181, 584
FriOI GRGCYC 2 cut(s) 211, 372
Fsp4HI GCNGC 4 cut(s) 61, 351, 387, 560
FspBI CTAG 3 cut(s) 237, 296, 306
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 61, 351, 387, 560
HaeIII GGCC 2 cut(s) 269, 288
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 65
Hin1II CATG 4 cut(s) 286, 293, 531, 616
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 2 cut(s) 53, 219
HinfI GANTC 1 cut(s) 275
HpaII CCGG 1 cut(s) 37
HphI GGTGA 5 cut(s) 79, 205, 437, 485, 543
Hpy188I TCNGA 3 cut(s) 206, 624, 666
Hpy188III TCNNGA 2 cut(s) 12, 641
HpyAV CCTTC 3 cut(s) 475, 619, 647
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4V TGCA 4 cut(s) 293, 350, 377, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 533, 542
HpyF3I CTNAG 1 cut(s) 546
Hsp92II CATG 4 cut(s) 286, 293, 531, 616
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 3, 302
LguI GCTCTTC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 47, 362, 546
LweI GCATC 2 cut(s) 10, 514
MaeI CTAG 3 cut(s) 237, 296, 306
MaeIII GTNAC 3 cut(s) 9, 30, 549
MalI GATC 2 cut(s) 5, 304
MboI GATC 2 cut(s) 3, 302
MboII GAAGA 3 cut(s) 91, 421, 533
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 2 cut(s) 211, 372
MluCI AATT 1 cut(s) 343
MnlI CCTC 8 cut(s) 167, 197, 235, 259, 391, 457, 570, 577
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 83
MslI CAYNNNNRTG 4 cut(s) 159, 261, 363, 423
MspA1I CMGCKG 1 cut(s) 559
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 38, 76
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 3 cut(s) 383, 533, 542
NciI CCSGG 1 cut(s) 38
NdeII GATC 2 cut(s) 3, 302
NlaIII CATG 4 cut(s) 286, 293, 531, 616
NmuCI GTSAC 3 cut(s) 9, 30, 549
NsiI ATGCAT 1 cut(s) 529
OliI CACNNNNGTG 1 cut(s) 159
PceI AGGCCT 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 74
PctI GAATGC 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 4 cut(s) 62, 352, 388, 561
Psp124BI GAGCTC 2 cut(s) 211, 372
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspPI GGNCC 1 cut(s) 286
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 559
RsaI GTAC 2 cut(s) 317, 670
RsaNI GTAC 2 cut(s) 316, 669
RseI CAYNNNNRTG 4 cut(s) 159, 261, 363, 423
SacI GAGCTC 2 cut(s) 211, 372
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 4 cut(s) 61, 351, 387, 560
Sau3AI GATC 2 cut(s) 3, 302
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 38, 76
SduI GDGCHC 2 cut(s) 211, 372
SfaNI GCATC 2 cut(s) 10, 514
SfcI CTRYAG 2 cut(s) 348, 486
SmiMI CAYNNNNRTG 4 cut(s) 159, 261, 363, 423
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 1 cut(s) 343
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 2 cut(s) 387, 434
SspMI CTAG 3 cut(s) 237, 296, 306
SstI GAGCTC 2 cut(s) 211, 372
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 36, 74
TaaI ACNGT 1 cut(s) 473
TaqI TCGA 2 cut(s) 138, 462
TasI AATT 1 cut(s) 343
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 3 cut(s) 9, 30, 549
TseI GCWGC 3 cut(s) 60, 350, 559
Tsp45I GTSAC 3 cut(s) 9, 30, 549
TspDTI ATGAA 3 cut(s) 323, 580, 629
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 543
XapI RAATTY 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 3 cut(s) 237, 296, 306
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.