AT4G14890

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016209
Physical Location & Seq
Forward (+)
8520819 .. 8521506
688 bp
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UTR
Exon/CDS
Intron
AT4G14890.1

Sequence Viewer

Length: 465 bp
ATGGCGACTCTTCCTCTCCCGACTCAAACTTCTACAATCTCTCTCCCTAAACCTTATCTCTCCAATTCCTTCTCCTTCCCACTCCGTAACGCAACACTCTCAACAACAACAAACCGCCGGAACTTTCTCACCACCGGAAGGATCATAGCTCGGGCATATAAAGTGGTGGTAGAGCACGACGGAAAGACGACTGAATTGGAAGTCGAACCAGACGAGACGATTCTATCTAAGGCTCTTGACTCTGGCCTTGACGTTCCCTACGACTGCAATCTCGGTGTTTGTATGACTTGTCCAGCGAAACTCGTGACCGGAACGGTGGATCAAAGTGGTGGGATGCTAAGTGATGATGTGGTTGAACGTGGCTACACGCTTCTATGTGCTTCGTATCCAACTTCTGATTGTCACATTAAGATGATCCCTGAGGAAGAACTCTTGTCTCTCCAGCTCGCCACTGCCAACGACTAA

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

4.74

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 58 - 131 5.2e-16 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14890
fragaria_vesca FvH4_4g15630
malus_domestica MD13G1193300.v1.1
prunus_persica Prupe.1G013900_v2.0.a1
pyrus_communis pycom16g16400
rosa_chinensis RchiOBHm_Chr4g0416181
rosa_laevigata RLG00000008008
rosa_multiflora Rmu_co8387285.1_g000001
rosa_roxburghii Rroxscaffold_5G00360040
rosa_rugosa Rorug04G0139700
rosa_samantha Rh4AG201700 Rh4BG199100 Rh4CG214200 Rh4DG198900
rosa_wichuraiana Rw4G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AclWI GGATC 3 cut(s) 149, 327, 409
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 356
AluBI AGCT 2 cut(s) 149, 445
AluI AGCT 2 cut(s) 149, 445
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 209, 441
AlwI GGATC 3 cut(s) 149, 327, 409
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 420
BauI CACGAG 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 177
BciVI GTATCC 1 cut(s) 396
BcoDI GTCTC 2 cut(s) 209, 441
BfuI GTATCC 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 150
BmsI GCATC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 425
BsaWI WCCGGW 2 cut(s) 134, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 118, 135, 309
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 209, 441
BsmBI CGTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 141, 319, 414
BspACI CCGC 1 cut(s) 115
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 412
BspPI GGATC 3 cut(s) 149, 327, 409
BssMI GATC 3 cut(s) 141, 319, 414
BssSI CACGAG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 3 cut(s) 228, 338, 420
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 3 cut(s) 144, 322, 417
BstMAI GTCTC 2 cut(s) 209, 441
BstMBI GATC 3 cut(s) 141, 319, 414
Bsu36I CCTNAGG 1 cut(s) 420
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 339
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 447
CviJI RGCY 5 cut(s) 149, 233, 246, 363, 445
CviKI_1 RGCY 5 cut(s) 149, 233, 246, 363, 445
DdeI CTNAG 3 cut(s) 228, 338, 420
DpnI GATC 3 cut(s) 143, 321, 416
DpnII GATC 3 cut(s) 141, 319, 414
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 209
FaiI YATR 5 cut(s) 146, 157, 159, 284, 376
FokI GGATG 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 1 cut(s) 246
HapII CCGG 3 cut(s) 118, 135, 309
HinfI GANTC 4 cut(s) 7, 22, 220, 239
HpaII CCGG 3 cut(s) 118, 135, 309
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 3 cut(s) 19, 236, 304
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 79, 85, 132
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 252, 358
HpyCH4V TGCA 1 cut(s) 267
HpyF3I CTNAG 3 cut(s) 228, 338, 420
HpySE526I ACGT 2 cut(s) 252, 358
Kzo9I GATC 3 cut(s) 141, 319, 414
LpnPI CCDG 8 cut(s) 131, 148, 222, 228, 306, 322, 432, 455
LweI GCATC 1 cut(s) 324
MaeII ACGT 2 cut(s) 252, 358
MaeIII GTNAC 3 cut(s) 86, 304, 401
MalI GATC 3 cut(s) 143, 321, 416
MboI GATC 3 cut(s) 141, 319, 414
MboII GAAGA 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 64, 194
MlyI GAGTC 2 cut(s) 16, 233
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 2 cut(s) 24, 415
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 3 cut(s) 118, 135, 309
NdeII GATC 3 cut(s) 141, 319, 414
NmuCI GTSAC 2 cut(s) 304, 401
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 258
PfeI GAWTC 1 cut(s) 220
PleI GAGTC 2 cut(s) 16, 233
PpsI GAGTC 2 cut(s) 16, 233
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 3 cut(s) 141, 319, 414
SchI GAGTC 2 cut(s) 16, 233
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 55, 151, 255, 361, 447
SfaNI GCATC 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 2 cut(s) 64, 194
SsiI CCGC 1 cut(s) 115
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 255, 361
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 64, 194
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 2 cut(s) 304, 401
Tsp45I GTSAC 2 cut(s) 304, 401
TspGWI ACGGA 2 cut(s) 74, 195
TspRI CASTG 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.