Rh4DG198900

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0016209
Physical Location & Seq
Forward (+)
38819925 .. 38820377
453 bp
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UTR
Exon/CDS
Intron
Rh4DG198900.1

Sequence Viewer

Length: 453 bp
ATGGCAACCCTTCACTTCACTCCATCTCCTTGTTTCACTCTCAACCCAAAACAGCCACACACGACCCAACTGCCCTCTCCTTTTCATCTCAGTCTCCGGCCAGCACGGCACCGTACACGGCTGCAGTCCAATGTGGTCCGGTCGTACAAGGTTGTGGTGGAGCACGAGGGCAAGTCCACTGAACTTGAGGTGGAGCCAGATGAGACCATACTAGAAAAGGCATTGGAGTCTGGATTGTCTGCGCCGCACGACTGCAAGCTTGGGGTGTGCATGACTTGCCCGGCTAAGCTTCTCGCCGGCGAGGTGGACCAGAGTGAAGGTATGCTGAGTGATGATGTGGTGGAGAGGGGGTATACATTGCTCTGTGTTTCGTATCCCAAATCGGATTGTCACATTCGGACCATACCGGAAGAGGAGCTGCTCTCACTGCAATTAGCGACAGCTAATGACTAG

Protein Analysis

150

Amino Acids

16.62

Weight (kDa)

5.45

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 54 - 127 1.7e-15 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14890
fragaria_vesca FvH4_4g15630
malus_domestica MD13G1193300.v1.1
prunus_persica Prupe.1G013900_v2.0.a1
pyrus_communis pycom16g16400
rosa_chinensis RchiOBHm_Chr4g0416181
rosa_laevigata RLG00000008008
rosa_multiflora Rmu_co8387285.1_g000001
rosa_roxburghii Rroxscaffold_5G00360040
rosa_rugosa Rorug04G0139700
rosa_samantha Rh4AG201700 Rh4BG199100 Rh4CG214200 Rh4DG198900
rosa_wichuraiana Rw4G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 353
AciI CCGC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 98
AfaI GTAC 2 cut(s) 115, 146
AluBI AGCT 4 cut(s) 259, 289, 418, 443
AluI AGCT 4 cut(s) 259, 289, 418, 443
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 98, 197
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 121, 418
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 3 cut(s) 136, 307, 399
AsuC2I CCSGG 1 cut(s) 281
AvaII GGWCC 3 cut(s) 136, 307, 399
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 108, 405
BccI CCATC 1 cut(s) 31
BceAI ACGGC 2 cut(s) 122, 134
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciVI GTATCC 1 cut(s) 384
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 98, 197
BfaI CTAG 2 cut(s) 212, 451
BfmI CTRYAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 106
BisI GCNGC 3 cut(s) 122, 245, 419
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 123, 246, 420
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 3 cut(s) 136, 307, 399
BmgT120I GGNCC 3 cut(s) 136, 307, 399
BmiI GGNNCC 2 cut(s) 110, 195
BmrFI CCNGG 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 407, 439
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 197
BsaWI WCCGGW 2 cut(s) 138, 406
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 335, 365
Bse118I RCCGGY 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 103, 317
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 2 cut(s) 108, 405
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 5 cut(s) 97, 139, 281, 297, 407
BsmAI GTCTC 2 cut(s) 98, 197
BsnI GGCC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 165
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 102, 318
BspLI GGNNCC 2 cut(s) 110, 195
BspMAI CTGCAG 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssNAI GTATAC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 164
Bst1107I GTATAC 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 276
BstC8I GCNNGC 3 cut(s) 102, 257, 298
BstDEI CTNAG 3 cut(s) 89, 285, 326
BstHHI GCGC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 98, 197
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 106, 276, 427
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 108, 405
BstZ17I GTATAC 1 cut(s) 354
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 177, 425
Cac8I GCNNGC 3 cut(s) 102, 257, 298
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 136, 307, 399
Csp6I GTAC 2 cut(s) 114, 145
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 1 cut(s) 271
CviJI RGCY 9 cut(s) 55, 100, 121, 196, 259, 284, 289, 418, 443
CviKI_1 RGCY 9 cut(s) 55, 100, 121, 196, 259, 284, 289, 418, 443
CviQI GTAC 2 cut(s) 114, 145
DdeI CTNAG 3 cut(s) 89, 285, 326
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 3 cut(s) 136, 307, 399
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 209, 272, 323, 354, 404
FatI CATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 3 cut(s) 122, 245, 419
Fsp4HI GCNGC 3 cut(s) 122, 245, 419
FspBI CTAG 2 cut(s) 212, 451
GlaI GCGC 1 cut(s) 243
GluI GCNGC 3 cut(s) 122, 245, 419
HaeIII GGCC 1 cut(s) 100
HapII CCGG 5 cut(s) 97, 139, 281, 297, 407
HhaI GCGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HindIII AAGCTT 2 cut(s) 257, 287
HinfI GANTC 1 cut(s) 227
HpaII CCGG 5 cut(s) 97, 139, 281, 297, 407
Hpy166II GTNNAC 4 cut(s) 116, 177, 307, 354
Hpy188I TCNGA 2 cut(s) 385, 399
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 4 cut(s) 116, 177, 307, 354
HpyAV CCTTC 2 cut(s) 20, 311
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 4 cut(s) 124, 255, 270, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 276, 427
HpyF3I CTNAG 3 cut(s) 89, 285, 326
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 242
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
LmnI GCTCC 3 cut(s) 160, 193, 415
LpnPI CCDG 9 cut(s) 110, 114, 152, 210, 216, 294, 310, 323, 420
Lsp1109I GCAGC 2 cut(s) 108, 405
MaeI CTAG 2 cut(s) 212, 451
MaeIII GTNAC 1 cut(s) 389
MboII GAAGA 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 431
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 6 cut(s) 85, 160, 181, 295, 339, 406
MreI CGCCGGCG 1 cut(s) 296
MroNI GCCGGC 1 cut(s) 296
MspI CCGG 5 cut(s) 97, 139, 281, 297, 407
MspR9I CCNGG 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 106, 276, 427
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 281
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 2 cut(s) 110, 195
NmuCI GTSAC 1 cut(s) 389
PdiI GCCGGC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 123, 246, 420
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 110, 195
PspPI GGNCC 3 cut(s) 136, 307, 399
PstI CTGCAG 1 cut(s) 126
RsaI GTAC 2 cut(s) 115, 146
RsaNI GTAC 2 cut(s) 114, 145
SatI GCNGC 3 cut(s) 122, 245, 419
Sau96I GGNCC 3 cut(s) 136, 307, 399
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 153, 192, 261, 291, 306, 322, 420, 445
SfcI CTRYAG 1 cut(s) 122
SgrAI CRCCGGYG 1 cut(s) 296
SinI GGWCC 3 cut(s) 136, 307, 399
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 431
SsiI CCGC 1 cut(s) 245
SspMI CTAG 2 cut(s) 212, 451
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 113
TasI AATT 1 cut(s) 431
TauI GCSGC 1 cut(s) 247
TscAI CASTG 2 cut(s) 184, 432
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 121, 418
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 2 cut(s) 184, 432
VpaK11BI GGWCC 3 cut(s) 136, 307, 399
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 2 cut(s) 212, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.